2010	Glöckner, F.O., and Joint, I. (2010) Marine microbial genomics in Europe: current status and perspectives Microbial Biotechnology: doi:10.1111/j.1751-7915.2010.00169.x.
	Duhaime MB, Wichels A, Waldmann J, Teeling H, Glöckner FO (2010) Ecogenomics and genome landscapes of marine Pseudoalteromonas phage H105/1. ISME J:doi:10.1038/ismej.2010.1094
	Kottmann R et al. (2010) Megx.net: integrated database resource for marine ecological genomics. Nucleic Acids Res 38:D391-D395
	Hankeln, W., Buttigieg, P.L., Fink, D., Kottmann, R., Yilmaz, P., and Glöckner, F.O. (online) MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. BMC Bioinformatics 11: 358
	Pena, A., Teeling, H., Huerta-Cepas, J., Santos, F., Yarza, P., Brito-Echeverria, J. et al. (2010) Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains. Isme J 4: 882-895
	Glöckner, J., Kube, M., Shrestha, P.M., Weber, M., Glöckner, F.O., Reinhardt, R., and Liesack, W. (2010) Phylogenetic diversity and metagenomics of candidate division OP3. Environmental Microbiology 12: 1218-1229.
2009	Wecker P, Klockow C, Ellrott A, Quast C, Langhammer P, Harder J, Glöckner FO (2009) Transcriptional response of the model planctomycete Rhodopirellula baltica SH1T to changing environmental conditions. BMC Genomics 10:410
	Meyerdierks A, Kube M, Kostadinov I, Teeling H, Glöckner FO, Reinhardt R, Amann R (2009) Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group. Environ Microbiol epub
	Wooley J, Field D, Glöckner FO (2009) Extending Standards for Genomics and Metagenomics Data: A Research Coordination Network for the Genomic Standards Consortium (RCN4GSC). SIGS 1:85-90
	Field D, Sterk P, Kyrpides N, Kottmann R, Glöckner FO, Hirschman L, Garrity G, Wooley J, Gilna P (2009) Meeting reports from the Genomic Standards Consortium (GSC) workshops 6 and 7. SIGS 1:68-71
	Strittmatter AW et al. (2009) Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environ Microbiol 11:1038-1055
2008	Field D et al. (2008) Working together to put molecules on the map. Nature 453:978-978
	Peplies J, Kottmann R, Ludwig W, Glöckner FO (2008) A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol 31:251-257
	Yarza P, Richter M, Peplies J, Euzeby J, Amann R, Schleifer KH, Ludwig W, Glöckner FO, Rossello-Mora R (2008) The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250
	Amaral-Zettler L, Peplies J, Ramette A, Fuchs B, Ludwig W, Glöckner FO (2008) Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany. Syst Appl Microbiol 31:258-268
	Bohnebeck U, Lombardot T, Kottmann R, Glöckner FO (2008) MetaMine - A tool to detect and analyse gene patterns in their environmental context. BMC Bioinformatics 9:459
	Van Brabant B et al. (2008) Laying the foundation for a genomic rosetta stone: Creating information hubs through the use of consensus identifiers. Omics-a Journal of Integrative Biology 12:123-127
	Garrity GM et al. (2008) Toward a standards-compliant genomic and metagenomic publication record. Omics 12:157-160
	Field D et al. (2008) The minimum information about a genome sequence (MIGS) specification. Nat. Biotechnol. 26:541-547
	Field D et al. (2008) Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. Omics 12:109-113
	Field D et al. (2008) Meeting report: the fourth Genomic Standards Consortium (GSC) workshop. Omics 12:101-108
	Kottmann R, Gray T, Murphy S, Kagan L, Kravitz S, Lombardot T, Field D, Glöckner FO, Consortium tGS (2008) A standard MIGS/MIMS compliant XML schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML). Omics 12:115-121
	Richter M, Lombardot T, Kostadinov I, Duhaime MB, Peplies J, Glöckner FO (2008) JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. BMC Bioinformatics 9:177
	Hieu CX, Voigt B, Albrecht D, Becher D, Lombardot T, Glöckner FO, Amann R, Hecker M, Schweder T (2008) Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltical SH1(T). Proteomics 8:1608-1623
2007	Pruesse E, Quast C, Knittel K, Fuchs B, Ludwig W, Peplies J, Glöckner FO (2007) SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 35:7188-7196
	Lombardot T, Kottmann R, Giuliani G, de Bono A, Glöckner FO (2007) MetaLook - a 3D visualisation software for marine ecological genomics. BMC Bioinformatics 8:406
	Woebken D, Teeling H, Wecker P, Dumitriu A, Kostadinov I, DeLong EF, Amann R, Glöckner FO (2007) From the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes. Isme J. 1:419-435
	Mussmann M et al. (2007) Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS. Biol. 5:1923-1937
	Fuchs BM et al. (2007) Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc. Natl. Acad. Sci. USA 104:2891-2896
	Richter M, Kube M, Bazylinski DA, Lombardot T, Glöckner FO, Reinhardt R, Schüler D (2007) Comparative genome analysis of four magnetotactic bacteria reveals a complex set of group-specific genes implicated in magnetosome biomineralization and function. J. Bacteriol. 189:4899-4910
	Borriss M, Lombardot T, Glöckner FO, Becher D, Albrecht D, Schweder T (2007) Genome and proteome characterization of the psychrophilic Flavobacterium bacteriophage 11b. Extremophiles 11:95-104
	Field D et al. (2007) eGenomics: Cataloguing our complete genome collection III. Comparative and Functional Genomics:1-7
2006	Bauer M et al. (2006) Whole genome analysis of the marine Bacteroidetes 'Gramella forsetii' reveals adaptations to degradation of polymeric organic matter. Environ. Microbiol. 8:2201-2213
	Woyke T et al. (2006) Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443:950-955
	Zaunmüller T, Kelly DJ, Glöckner FO, Unden G (2006) Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria. Microbiology-(UK) 152:2443-2453
	Schübbe S, Würdemann C, Peplies J, Heyen U, Wawer C, Glöckner FO, Schüler D (2006) Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense. Appl. Environ. Microbiol. 72:5757-5765
	Peplies J, Lachmund C, Glöckner FO, Manz W (2006) A DNA microarray platform based on direct detection of rRNA for characterization of freshwater sediment-related prokaryotic communities. Appl. Environ. Microbiol. 72:4829-4838
	Würdemann C, Peplies J, Schübbe S, Ellrott A, Schuler D, Glöckner FO (2006) Evaluation of gene expression analysis using RNA-targeted partial genome arrays. Syst. Appl. Microbiol. 29:349-357
	Lombardot T, Kottmann R, Pfeffer H, Richter M, Teeling H, Quast C, Glöckner FO (2006) Megx.net - database resource for marine ecological genomics. Nucleic Acid Res. 34:D390-D393
	Glöckner FO (2006) Umweltgenomik: Schlüssel zum Verständnis mariner mikrobieller Diversität und Funktion. Jahrbuch der Max Planck Gesellschaft
	Glöckner FO, Meyerdierks A (2006) Metagenome Analysis. In: Stackebrandt E (ed). Springer-Verlag, Heidelberg
	Teeling H, Glöckner FO (2006) RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits. BMC Bioinformatics 7:doi:10.1186/1471-2105-1187-1166
	Anton J et al. (2006) Salinibacter ruber: Genomics and Biogeography. In: Gunde-Cimerman N, Plemenitas A, Oren A (eds) Adaptation to life in high salt concentrations in Archaea, Bacteria and Eukarya. Cellular Origins, Life in Extreme Habitats and Astrobiology (COLE). Kluwer Academic Publishers, Dordrecht, Netherlands, pp 257-266
2005	Meyerdierks A, Kube M, Lombardot T, Knittel K, Bauer M, Glöckner FO, Reinhardt R, Amann R (2005) Insights into the genomes of archaea mediating the anaerobic oxidation of methane. Environ. Microbiol. 7:1937-1951
	Gernert C, Glöckner FO, Krohne G, Hentschel U (2005) Microbial diversity of the freshwater sponge Spongilla lacustris. Microb. Ecol. 50:206-212
	Babenzien H-D, Glöckner FO, Head IM (2005) Genus Achromatium Schewiakoff 1893, 1AL. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey's Manual of Systematic Bacteriology, 2nd Edition. Williams & Wilkens, Baltimore, USA, pp 142-147
	Wallner SR, Bauer M, Würdemann C, Wecker P, Glöckner FO, Faber K (2005) Highly enantioselective sec-Alkylsulfatase activity of the marine Planctomycete Rhodopirellula baltica shows retention of configuration. Angew. Chem. Int. Ed. 44:2-4
	Mussmann, M., M. Richter, T. Lombardot, A. Meyerdierks, J. Kuever, M. Kube, F. O. Glöckner, and R. Amann (2005) Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J. Bacteriol. 187:7126-7137
	Gade, D., D. Theiss, D. Lange, E. Mirgorodskaya, T. Lombardot, F. O. Glöckner, M. Kube, R. Reinhardt, R. Amann, H. Lehrach, R. Rabus, and J. Gobom (2005) Towards the proteome of the marine bacterium Rhodopirellula baltica: Mapping the soluble proteins. Proteomics 5:3654-3671
	Kumar, Y., R. Westram, S. Behrens, B. Fuchs, F. O. Glöckner, R. Amann, H. Meier, and W. Ludwig (2005) Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics 6: 61
	Lombardot T, Bauer M, Teeling H, Amann R, Glöckner FO (2005) The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons. FEMS Microbiol. Lett. 242:137-145
2004	Teeling, H., Waldmann, J., Lombardot, T., Bauer, M., and Glöckner, F.O. (2004). TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics., 5 (1): 163
	Teeling, H., Meyerdierks, A., Bauer, M., Amann, R., and Glöckner F.O. (2004). Application of tetranucleotide frequencies for the assignment of genomic fragments. Env. Microbiol., 6 (9): 938-947.
	Peplies, J., Glöckner, F.O., Amann, R., and Ludwig W. (2004). Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst. Applied Microbiol., 27 (5): 573-580.
	Bauer M, Lombardot T, Teeling H, Naomi LW, Amann RI, Glöckner FO (2004) Phylogenetic implications of the unexpected presence of archaeal-like genes for C1 transfer enzymes in Planctomycetes. J. Mol. Evol. 59:571-586
	Rabus, R., Ruepp, A., Frickey, T., Rattei, T., Fartmann, B., Stark, M., Bauer, M., Ziba,t A., Lombardot, T., Becker, I., Amann, J., Gellner, K., Teeling, H., Leuschner, W.D., Glöckner, F.O., Lupas, A.N., Amann, R., and Klenk, H.P. (2004). The genome of Desulfotalea psychrophila, a sulfate-reducing bacterium from permanently cold Arctic sediments. Env. Microbiol., 6 (9): 887-902.
	Heuchert, A., Glöckner, F.O., Amann, R., and Fischer, U. (2004). Psychrobacter nivimaris sp nov, a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica). Syst. Applied Microbiol., 27 (4): 399-406.
	Gade, D., H. Schlesner, F.O. Glöckner, R. Amann, S. Pfeiffer and M. Thomm (2004) Identification of planctomycetes with order-, genus- and strain-specific 16S rRNA-targeted probes. Microbial Ecology, 47 (3): 243-251.
	Teeling H., Lombardot T., Bauer M., Ludwig W., and Glöckner F.O. (2004) Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. IJSEM, 54(3): 791-801.
	Peplies J., Lau S.C.K., Pernthaler J., Amann R., and Glöckner F.O. (2004) Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Env. Microbiology, 6 (6): 638-645.
	Brinkmeyer, R., Glöckner, F.O., Helmke, E., and Amann, R. (2004). Predominance of beta-proteobacteria in summer melt pools on Arctic pack ice. Limnology & Oceanography, 49 (4): 1013-1021.
2003	Krüger, M., Meyerdierks, A., Glöckner, F.O., Amann, R., Widdel, F., Kube, M., Reinhardt, R., Kahnt, R., Bocher, R., Thauer, R.K. and Shima, S. (2003). A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature, 426 (6968): 878-881.
	Glöckner, F.O., Kube, M., Bauer,. M., Teeling, H., Lombardot, T., Ludwig, W., Gade, D., Beck, A., Borzym, K., Heitmann, K., Rabus, R., Schlesner, H., Amann, R. and Reinhardt, R. (2003). Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Natl. Acad. Sci. USA, 100 (14): 8298-8303.
	Peplies, J., F.O. Glockner and R. Amann (2003). Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol., 69(3): p. 1397-1407.
	Kniemeyer, O., T. Fischer, H. Wilkes, F.O. Glöckner and F. Widdel (2003). Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium. Appl. Environ. Microbiol., 69(2): p. 760-768.
2002	Richter, E., S. Niemann, F.O. Gloeckner, G.E. Pfyffer and S. Rusch-Gerdes (2002). Mycobacterium holsaticum sp. Nov. Int. J. Syst. Evol. Microbiol., 52: p. 1991-1996.
	Rabus, R., Gade, D., Helbig, R., Bauer, M., Glöckner, F.O., Kube, M., Schlesner, H., Reinhardt, R., Amann, R. (2002). Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach. Proteomics, 2(6): p. 649-655.
2001	Eilers, H., J. Pernthaler, J. Peplies, F.O. Glöckner, G. Gerdts and R. Amann (2001). Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Appl. Environ. Microbiol., 2001. 67(11): p. 5134-5142.
	Pernthaler, J., Posch, T., Simek, K., Vrba, J., Pernthaler, A., Glöckner, F.A., Nübel, U., Psenner, R. and R. Amann (2001). Predator-Specific Enrichment of Actinobacteria from a Cosmopolitan Freshwater Clade in Mixed Continuous Culture. Applied and Environmental Microbiology, 67(5), 2145-2155.
	Surkov, V.A., Dubinina, G.A., Lysenko, A.M., Glöckner, F.O. and J. Kuever (2001). Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus, and Dethiosulfovibrio acidaminovorans, three novel anaerobic, thiosulfate- and sulfur-reducing bacterium isolated from "Thiodendron" sulfur mats in different saline environments. International Journal of Systematic and Evolutionary Microbiology , 51, 327-337.
	Pernthaler, J., Glöckner, F.O., Schönhuber, W. and R. Amann (2001). Fluorescence In situ Hybridization. Methods in Marine Microbiology, 30, p.207-226.
2000	Glöckner, F.O., Zaichikov, E., Belkova, N., Denissova, L., Pernthaler, J., Pernthaler, A. and R. Amann (2000). Comparative 16S rRNA Analysis of Lake Bacterioplankton Reveals Globally Distributed Phylogenetic Clusters Including an Abundant Group of Actinobacteria. Applied and Environmental Microbiology, 66(11), 5053-5065.
	Jurgens, G., Glöckner, F.-O., Amann, R., Saano, A., Montonen, L., Likolammi, M. and Münster, U. (2000). Identification of Novel Archaea in Bacterioplankton of a Boreal Forest Lake by Phylogenetic Analysis and Fluorescent In Situ Hybridization. FEMS Microbiology Ecology, 34(1), 45-56.
	Fuchs, B.M, Glöckner, F.O., Wulf, J. and R. Amann (2000). Unlabeled Helper Oligonucleotides Increase the In situ - Accessibility of 16S rRNA for Fluorescently Labeled Oligonucleotide Probes. Applied and Environmental Microbiology, 66(8), 3603-3607.
	Eilers, H., Pernthaler, J., Glöckner, F.O. and R. Amann (2000). Culturability and in situ Abundance of Pelagic Bacteria from the North Sea. Applied and Environmental Microbiology, 66(7), 3044-3051.
	Head, I.M., Gray, N.D., Babenzien, H.-D. and F.O. Glöckner (2000). Uncultured giant sulfur bacteria of the genus Achromatium. FEMS Microbiology Ecology, 33, 171-180.
	Weller, R., Glöckner, F.O. and R. Amann (2000). 16S rRNA-Targeted Oligonucleotide Probes for the in situ Detection of Members of the Phylum Cytophaga-Flavobacterium-Bacteroides . Systematic and Applied Microbiology, 23(1), 107-114.
1999	Simon, M., Glöckner, F.O. and R. Amann (1999). Different Community Structure and Temperature Optima of Heterotrophic Picoplankton in Various Regions of the Southern Ocean. Aquatic Microbial Ecology, 18(3), 275-284.
	Glöckner, F.O., Fuchs, B.M. and R. Amann (1999). Bacterioplankton Composition in Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization. Applied and Environmental Microbiology, 65(8), 3721-3726.
	Glöckner, F.O., Wulf, J., Babenzien, H.-D. and R. Amann (1999). Phylogeny and Diversity of Achromatium oxaliferum. Systematic and Applied Microbiology, 22(1), 28-38.
1998	Pernthaler, J., Glöckner, F.O., Unterholzner, S., Alfreider, A., Psenner, R. and R. Amann (1998) Seasonal Community and Population Dynamics of Pelagic Bacteria and Archaea in a High Mountain Lake. Applied and Environmental Microbiology, 64(11), 4299-4306.
	Glöckner, F.O., Babenzien, H.-D. and R. Amann (1998). Phylogeny and Identification In Situ of Nevskia ramose. Applied and Environmental Microbiology, 64(5), 1895-1901.
1997	Amann, R., Glöckner, F.O. and A. Neef (1997) Modern Methods in Subsurface Microbiology: In situ Identification of Microorganisms with Nucleic Acid Probes. FEMS Micobiology Reviews, 20(3-4), 191-200.
1996	Alfreider, A., Pernthaler, J., Amann, R., Sattler, B., Glöckner, F.O., Wille, A. and R. Psenner (1996). Community Analysis of the Microbial Assemblages in the Winter Cover and Pelagic Layers of a High Mountain Lake using Whole-cell in situ Hybridization. Applied and Environmental Microbiology, 62(6), 2138-2144.
	Glöckner, F.O., Amann, R., Alfreider, A., Pernthaler, J., Psenner, R., Karlheinz Trebesius, K., and K.-H. Schleifer (1996) An In Situ Hybridization Protocol for Detection and Identification of Planktonic Bacteria. Systematic and Applied Microbiology, 19(3), 403-406.