Dr. Jörg Peplies

Peer reviewed journals

Yarza P., Richter M., Peplies J., Euzeby J., Amann R., Schleifer K. H., Ludwig W., Glöckner F. O., and Rossello-Mora R. (2008).
The All-Species Living Tree Project: a 16S rRNA-based phylogenetic tree of all sequenced type strains.
Syst. Appl. Microbiol., in press, early online doi:10.1016/j.syapm.2008.07.001

Peplies J., Kottmann R., Ludwig W., and Glöckner F. O. (2008).
A Standard Operating Procedure for Phylogenetic Inference (SOPPI) using (rRNA) marker genes.
Syst. Appl. Microbiol., in press

Richter M., Lombardot T., Kostadinov I., Kottmann R., Duhaime M. B., Peplies J., and Glöckner F. O. (2008).
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes.
BMC Bioinformatics 9:177

Pruesse E., Quast C., Knittel K., Fuchs B., Ludwig W., Peplies J., and Glöckner F. O. (2007).
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.
Nuc. Acids Res. 35 (21): 7188-7196

Pradillon F., Schmidt A., Peplies J., and Dubilier N. (2007).
Species identification of marine invertebrate early stages by whole-larvae in situ hybridisation of 18S ribosomal RNA.
Mar. Ecol. Prog. Ser. 333: 103-116

Schübbe S., Würdemann C., Peplies J., Hayen U., Wawer C., Glöckner F.O., and Schüler D. (2006).
Transcriptional organization and regulation of magnetosome operons in Magnetospirillum gryphiswaldense.
Appl. Environ. Microbiol. 72 (9): 5757-5765

Peplies J., Lachmund C., Glöckner F.O., and Manz W. (2006).
A DNA microarray platform based on direct detection of rRNA for characterization of fresh water sediment-related prokaryotic communities.
Appl. Environ. Microbiol. 72 (7): 4829-4838

Würdemann C., Peplies J., Schübbe S., Ellrott A., Schüler D., and Glöckner F.O. (2006).
Evaluation of gene expression analysis using RNA-targeted partial genome arrays.
System. Appl. Microbiol. 29 (5): 349-357

Flies C., Peplies J., Schüler D. (2005).
A combined approach for the characterization of uncultivated magnetotactic bacteria from various aquatic environments.
Appl. Environ. Microbiol. 71 (5): 2723-2731.

Peplies J., Glöckner F.O., Amann R., and Ludwig W. (2004).
Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA
genes of Alphaproteobacteria from North Sea bacterioplankton.
Syst. Appl. Microbiol., 27 (5): 573-580.

Peplies J., Lau S.C.K., Pernthaler J., Amann R., and Glöckner F.O. (2004).
Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton.
Environ. Microbiol., 6 (6): 638-645.

Peplies J., Glöckner F.O., and Amann, R. (2003).
Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes.
Appl. Environ. Microbiol., 69 (3): 1397-1407.

Eilers H., Pernthaler J., Peplies J., Glöckner F.O., Gerdts G. , and Amann R. (2001).
Isolation of novel pelagic bacteria from the German Bight and their seasonal contributions to surface picoplankton.
Appl. Environ. Microbiol. 67 (11): 5134-5142.

Niemeyer C. M., Bürger W., and Peplies J. (1998).
Covalent DNA-streptavidin conjugates as building blocks for novel biometallic
nanostructures.
Angew. Chem. Int. Edit. 37 (16): 2265-2268.

Workshop Reports

Amaral-Zettler L., Peplies J., Ramette A., Fuchs B., Ludwig W., and Glöckner F.O. (2008).
Proceedings of the International Workshop on Ribosomal RNA Technology, April 7-9, 2008, Bremen, Germany.
Syst. Appl. Microbiol., in press

Book chapters

Amann R., Peplies J., and Schüler D. (2006).
Diversity and Taxonomy of Magnetotactic Bacteria.
in: "Magnetoreception and magnetosomes in bacteria (Microbiology monographs series)". 2006. Schüler, D. (editor), Springer, Heidelberg.

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e-mail: jpepliesribocon.com

Ribocon is a spin-off of the MPI Bremen founded in 2005 and a Science Service Company working in the fields of Bioinformatics & Molecular Diagnostics.