Holmkvist, L., A. Kamyshny Jr., C. Vogt, K. Vamvakopoulos, T. G. Ferdelman & B. B Jørgensen (2011) Sulfate reduction below the sulfate-methane transition in Black Sea sediments. Deep-Sea Research, Part I, 58: 493-504.

2010

Holmkvist, L., E. T. Arning, K. Küster, V. Vandieken, J. Peckmann, M. Zabel & B. B. Jørgensen (2010) Phosphate geochemistry, mineralization processes, and Thioploca distribution in shelf sediments off central Chile. Marine Geology, 277: 61-72.

Jørgensen, B. B., R. Dunker, S. Grünke & H. Røy (2010) Filamentous sulfur bacteria, Beggiatoa spp., in arctic marine sediments (Svalbard,79°N), FEMS Microbiology Ecology, 73: 500-513.

Dunker, R., H. Røy & B. B. Jørgensen (2010) Temperature regulation of gliding motility
in filamentous sulfur bacteria, Beggiatoa spp., FEMS Microbiology Ecology, 73: 234-242.

Ridinger, N., Y. S. Lin, B. Brunner, A. Vossmeyer, T. G. Ferdelman & B. B. Jørgensen (2010) Methane at the sediment-water transition in Black Sea sediments. Chemical Geology, 274: 29-37.

Jørgensen, B. B. (2010) Big sulfur bacteria, ISME Journal, 4: 1083-1084.

Sawicka, J. E., A. Robador, C. Hubert, B. B. Jørgensen & V. Brüchert (2010) Effects of freeze-thaw cycles on anaerobic microbial processes in an Arctic intertidal mud flat, ISME Journal, 4: 585-594.

Jørgensen, B. B. & R. J. Parkes (2010) Role of sulfate reduction and methane for anaerobic carbon cycling in eutrophic fjord sediments (Limfjorden, Denmark). Limnology and Oceanography, 55: 1338-1352.

Hubert, C., C. Arnosti, V. Brüchert, A. Loy, V. Vandieken & B. B. Jørgensen (2010) Thermophilic anaerobes in arctic marine sediments induced to mineralize complex organic matter at high temperature. Environmental Microbiology, 12: 1089-1104.

Al-Najjar, M., D. de Beer, B. B. Jørgensen, M. Kühl & L. Polerecky (2010) Conversion and conservation of light energy in a photosynthetic microbial mat. ISME Journal, 4: 440-449

2009

Hubert, C., A. Loy, M. Nickel, C. Arnosti, C. Baranyi, V. Brüchert, T. Ferdelman, K. Finster, F. M. Christensen, J. Rosa de Rezende, V. Vandieken & B. B. Jørgensen (2009) A constant flux of diverse thermophilic bacteria into the cold arctic seabed. Science, 325: 1541-1544.

Robador, A., V. Brüchert & B. B. Jørgensen (2009) The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environmental Microbiology, 11: 1692-1703.

Teske, A., B. B. Jørgensen & V. A. Gallardo (2009) Filamentous bacteria inhabiting the sheaths of marine Thiploca spp. on the Chilean continental shelf. FEMS Microbiology Ecology, 68: 164-172.

Høgslund, S., N. P. Revsbech, J. G. Kuenen, B. B. Jørgensen, V. A. Gallardo, J. van de Vossenberg, J. L. Nielsen, L. Holmkvist, E. T. Arning & L. P. Nielsen (2009) Physiology and behaviour of marine Thioploca. The ISME Journal, 3: 647-657.

Leloup, J., H. Fossing, K. Kohls, L. Holmkvist, C. Borowski & B. B. Jørgensen (2009) Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation. Environmental Microbiology, 11: 1278-1291.

Lomstein, B. Aa., J. Niggemann, B. B. Jørgensen & A. T. Langerhuus (2009) Accumulation of prokaryotic remains during organic matter diagenesis in surface sediments off Peru. Limnology and Oceanography, 54: 1139-1151.

Dale, A. W., P. Regnier, P. van Cappellen, H. Fossing, J. B. Jensen & B. B. Jørgensen (2009) Remote quantification of methane fluxes in gassy marine sediments through seismic survey. Geology, 37: 235-238.

Røy, H., K. Vopel, M. Huettel & B. B. Jørgensen (2009) Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum. Marine Biology, 156: 669-677.

Knab, N. J., B. A. Cragg, L. Holmkvist, C. Borowski, R. J. Parkes & B. B. Jørgensen (2009) Regulation of anaerobic methane oxidation in sediments of the Black Sea. Biogeosciences, 5: 2305-2341.

2008

Nickel, M., V. Vandieken, V. Brüchert & B B. Jørgensen (2008) Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition. Deep-Sea Research II, 55:2390-2398.

Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B. B. Jørgensen & M. M. M. Kuypers (2008) A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, 105:17861-17866.

Khalili, A., K. Javadi, A. Saidi, A. Goharzadeh, M. Huettel & B. B. Jørgensen (2008) On generating uniform bottom shear stress. Part I: A quantitative study of microcosm chambers. Recent Patents on Chemical Engineering, 1: 174-191.

Finke, N. & B. B. Jørgensen (2008) Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. The ISME Journal, 2: 815-829.

Dale, A. W., D. R. Aguilera, P. Regnier, H. Fossing, N. J. Knab & B. B. Jørgensen (2008) Seasonal dynamics of the depth and rate of anaerobic oxidation of methane in Aarhus Bay (Denmark) sediments. Journal of Marine Research, 66: 127-155.

Knab, N. J., A. W. Dale, K. Lettmann, H. Fossing & B. B. Jørgensen (2008) Thermodynamic and kinetic control on anaerobic oxidation of methane in marine sediments. Geochimica et Cosmochimica Acta, 72: 3746-3757.

Dale, A. W., P. Regnier, N. J. Knab, B. B. Jørgensen & P. Van Cappellen (2008) Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling. Geochimica et Cosmochimica Acta, 72: 2880–2894.

Knab, N. J., B. A. Cragg, C. Borowski, R. J. Parkes, R. Pancost & B. B. Jørgensen (2008) Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): I. Geochemical and microbiological analyses. Geochimica et Cosmochimica Acta, 72: 2868–2879.

Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B. B. Jørgensen, A. Larson & J. Peckmann (2008) Lipid biomarker patterns of phosphogenic sediments for upwelling regions. Geomicrobiology Journal, 25: 69-82.

Mussmann, M., F. Z. Hu, M. Richter, D. de Beer, A. Preisler, B. B. Jørgensen, M. Hunemann, F. O. Glöckner, R. Amann, W. J. H. Koopman & R. S. Lasken (2008) Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biology, 5: e230. doi: 10.1371/journal.pbio.0050230.

Boudreau, B. P., C. Arnosti, B. B. Jørgensen & D. E. Canfield (2008) Comment on “Physical Model for the Decay and Preservation of Marine Organic Carbon”. Science, 319: 1616.

Zopfi, J., M. E. Böttcher & B. B. Jørgensen (2008) Biogeochemistry of sulfur and iron in Thioploca-colonized surface sediments in the upwelling area off central Chile. Geochimica et Cosmochimica Acta, 72: 827-843.

2007

Wakeham, S. G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jørgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damsté, H. M. Talbot & D. Woebken (2007) Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Organic Chemistry, 38 : 2070-2097.

Jørgensen, B. B. & A. Boetius (2007) Feast and Famine – microbial life in the deep-sea bed. Nature Review Microbiology, 5: 770-781.

D´Hondt, S., F. Inagaki, T. Ferdelman, B. B. Jørgensen, K. Kato, P. Kemp, P. Sobecky, M. Sogin & K. Takai (2007) Exploring subseafloor life with the Integrated Ocean Drilling Program. Scientific Drilling, 5: 26-37.

Preisler, A., D. de Beer, A. Lichtschlag, G. Lavik, A. Boetius & B. B. Jørgensen (2007) Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment. The ISME Journal, 1: 341-353.

Polerecky, L., A. Bachar, R. Schoon, M. Grinstein, B. B. Jørgensen, D. de Beer & H. Jonkers (2007) Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain. Environmental Microbiolgy, 9: 2007-2024.

Kuypers, M. M. M. & B. B. Jørgensen (2007) The future of single-cell environmental microbiology. Environmental Microbiolgy, 9: 6-7.

Parkes, R. J., B. A. Cragg, N. Banning, F. Brock, G. Webster, J. C. Fry, E. Hornibrook, R. D. Pancost, S. Kelly, N. Knab, B. B. Jørgensen, J. Rinna & A. J. Weightman (2007) Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerak, Denmark). Environmental Microbiology, 9: 1146-1161.

Finke, N., T. M. Hoehler & B. B. Jørgensen (2007) Hydrogen ´leakage´ during methanogenesis from methanol and methylamine: implications for anaerobic carbon degradation pathways in aquatic sediments. Environmental Microbiology, 9: 1060-1071.

Finke, N., V. Vandieken & B. B. Jørgensen (2007) Acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in Arctic marine sediments, Svalbard. FEMS Microbiology Ecology, 59: 10-22.

Glud, R. N., P. Berg, H. Fossing & B. B. Jørgensen (2007) Effect of the diffusive boundary layer on benthic mineralization and O2 distribution: A theoretical model analysis. Limnology and Oceanography, 52: 547-557

Leloup, J., A. Loy, N. J. Knab, C. Borowski, M. Wagner & B. B. Jørgensen (2007) Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environmental Microbiology, 9: 131-142.

2006

Vandieken, V., N. Finke and B. B. Jørgensen (2006) Pathways to carbon oxidation in an Arctic fjord sediment (Svalbard) and isolation of psychrophilic and psychrotolerant Fe(III)-reducing bacteria. Marine Ecology Progress Series, 322: 29-41.

Vandieken, V., M. Nickel and B. B. Jørgensen (2006) Carbon mineralization in Arctic sediments northeast of Svalbard: Mn(IV) and Fe(III) reduction as principal anaerobic respiratory pathways. Marine Ecology Progress Series, 322: 15-27.

Arnosti, C. and B. B. Jørgensen (2006) Organic carbon degradation in Arctic marine sediments, Svalbard: A comparison of initial and terminal steps. Geomicrobiology Journal, 23: 551-563.

Jørgensen, B. B. and S. D´ Hondt (2006) A starving majority deep beneath the seafloor. Science, 314: 932-934.

Inagaki, F., M. Kuypers, U. Tsunogai, J. Ishibashi, K. Nakamura, T. Treude, S. Ohkubo, M. Nakaseama, K. Gena, H. Chiba, H. Hirayama, T. Nunoura, K. Takai, B. B. Jørgensen, K. Horikoshi and A. Boetius (2006) Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. PNAS, 103: 14164-14169.

Lomstein, B. Aa., B. B. Jørgensen, C. S. Schubert and J. Niggemann (2006) Amino acid biogeo- and stereochemistry in coastal Chilean sediments. Geochimica et Cosmochimica Acta, 70: 2970-2989.

Inagaki, F., T. Nunoura, S. Nakagawa, A. Teske, M. Lever, A. Lauer, M. Suzuki, K. Takai, M. Delwiche, F. S. Colwell, K. H. Nealson, K. Horikoshi, S. D'Hondt and B. B. Jørgensen (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proceedings of the National Academy of Science, USA, 103: 2815-2820.

Böttcher, M. E., T. G. Ferdelman, B. B. Jørgensen, R. E. Blake, A. V. Surkov and G. E. Claypool (2006) Sulfur isotope fractionation by the deep biosphere within sediments of the Eastern Equatorial Pacific and Peru Margin. Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.

Blake, R. E., A. V. Surkov, M. E. Böttcher, T. G. Ferdelman & B. B. Jørgensen (2006) Oxygen isotope composition of dissolved sulphate in deep-sea sediments: Eastern Equatorial Pacific Ocean. Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.

Vandieken, V., C. Knoblauch and B.B. Jørgensen (2006) Desulfotomaculum arcticum sp. nov., a novel spore-forming, moderately thermophilic, sulfate-reducing bacterium isolated from a permanently cold fjord sediment of Svalbard. Journal of Systematic and Evolutionary Microbiology, 56: 687-690.

Vandieken, V., C. Knoblauch and B.B. Jørgensen (2006) Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., two psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III). International Journal of Systematic and Evolutionary Microbiology, 56: 681-685.

Vandieken, V., M. Mußmann, H. Niemann and B.B. Jørgensen (2006) Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov. psychrophilic Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard. International Journal of Systematic and Evolutionary Microbiology, 56: 1133-1139.

Jørgensen, B.B., S.L. D’Hondt and D.J. Miller. (2006) Leg 201 Synthesis: Controls on microbial communities in deeply buried sediments. In Jørgensen, B.B., S.L. D’Hondt and D.J. Miller (eds.) Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.

Jørgensen, B. B. (2006) Bacteria and marine biogeochemistry, pp. 173-207. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry, 2nd ed. Springer, Berlin.

Jørgensen, B. B., and S. Kasten (2006) Sulfur cycling and methane oxidation, pp. 271-309. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry, 2nd ed. Springer, Berlin.

2005

Treude, T., M. Krüger, A. Boetius and B.B. Jørgensen (2005) Environmental control on anaerobic oxidation of methane in gassy marine sediments of Eckernförde bay (German Baltic). Limnology and Oceanography, 50: 1771-1786.

Jørgensen, B.B., A. Teske and A. Ahmad (2005) Thioploca. In N.R. Krieg, J.T. Staley and D.J. Brenner (eds.) Bergey's Manual of Systematic Bacteriology, Vol. 2, 171-178.

Schulz, H.N., and B.B. Jørgensen (2005) Thiomargarita. In N.R. Krieg, J.T. Staley and D.J. Brenner (eds.) Bergey's Manual of Systematic Bacteriology, Vol. 2, 169-171.

Goharzadeh, A., A. Khalili and B. B. Jørgensen (2005) Transition layer thickness at a fluid-porous interface. Physics of Fluids, 17: 57102 (online version).

Parkes, R. J., G. Webster, B. A. Cragg, A. J. Weightman, C. J. Newberry, T. G. Ferdelman, J. Kallmeyer, B. B. Jørgensen, I. W. Aiello & J. C. Fry (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature, 436: 390-394.

Treude, T., J. Niggemann, J. Kallmeyer, P. Wintersteller, C. J. Schubert, A. Boetius & B. B. Jørgensen (2005) Anaerobic oxidation of methane and sulfate reduction along the Chilean continental margin. Geochimica et Cosmochimica Acta, 69: 2767-2779.

Kuypers, M. M. M., G. Lavik, D. Woebken, M. Schmid, B. M. Fuchs, R. Amann, B. B. Jørgensen & M. S. M. Jetten (2005) Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxication. Proceedings of the National Academy of Sciences, USA, 102: 6478-6483.

Jørgensen, B. B., R. N. Glud & O. Holby (2005) Oxygen distribution and bioirrigation in Arctic fjord sediments (Svalbard, Barents Sea). Marine Ecology Progress Series, 292: 85-95.

Schippers, A., L. N. Neretin, J. Kallmeyer, T. G. Ferdelman, B. A. Cragg, R. J. Parkes & B. B. Jørgensen (2005) Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature, 433: 861-864.

Røy, H., M. Hüttel & B. B. Jørgensen (2005) The influence of topography on the functional exchange surface of marine soft sediments, assessed from sediment topography measured in situ. Limnology and Oceanography, 50(1): 106-112.