2012	Heindel K., Birgel D., Brunner B., Thiel V., Westphal H., Gischler E., Ziegenbalg S.B., Cabioch G., Sjövall P., Peckmann J. Post-glacial microbialite formation in coral reefs in the Pacific, Atlantic, and Indian Ocean Chemical Geology, 304–305, 117–130. doi: 10.1016/j.chemgeo.2012.02.009
2012	Brunner B., Einsiedl F., Arnold G. L., Müller I., Templer S., Bernasconi S. M. The reversibility of dissimilatory sulphate reduction and the cell-internal multistep reduction of sulphite to sulphide: insights from the oxygen isotope composition of sulphate Isotopes in Environmental & Health Studies, 48 (1), 33-54. doi:10.1080/10256016.2011.608128
2012	Berndmeyer C., Birgel D., Brunner B., Wehrmann L.M., Jöns N., Bach W., Arning E.T., Föllmi K.B., Peckmann J. The influence of bacterial activity on phosphorite formation in the Miocene Monterey Formation, California Palaeogeography, Palaeoclimatology, Palaeoecology, 317-318, 171-181 doi:10.1016/j.palaeo.2012.01.004
2012	Pirlet H., Wehrmann L.M., Foubert A., Brunner B., Blamart D., de Mol L., Van Rooij D., Dewanckele J., Cnudde V., Swennen R., Duyck P., Henriet J.-P. Unique authigenic mineral assemblages reveal different diagenetic histories in two neighbouring cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz Sedimentology, 59, 578-604. doi: 10.1111/j.1365-3091.2011.01267.x
2011	Holler, T., G. Wegener, H. Niemann, C. Deusner, T.G. Ferdelman, A. Boetius, B. Brunner, Widdel F. Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction* Proceedings of the National Academy of Sciences of the United States of America, 108 (52), E1484-E1490. doi: 10.1073/pnas.1106032108 *Corresponding author
2011	Eckert T., Brunner B., Edwards E.A., Wortmann U.G. Microbially mediated re-oxidation of sulfide during dissimilatory sulfate reduction by *Desulfobacter latus* Geochimica et Cosmochimica Acta, 75, 3469-3485. doi: 10.1016/j.gca.2011.03.034
2011	Goldhammer T., Brunner B., Bernasconi S.M., Ferdelman T.G., Zabel M. Phosphate oxygen isotopes: insights into sedimentary phosphorus cycling from the Benguela upwelling system Geochimica et Cosmochimica Acta, 75, 3581-3599. doi:10.1016/j.gca.2011.04.006
2011	Goldhammer T., Max T. , Brunner B., Einsiedl F., Zabel. M. Marine sediment pore-water profiles of phosphate δ18O using a refined micro-extraction. Limnology and Oceanography:Methods, 9, 110-120. doi: 10.4319/lom.2011.9.110
2011	Lindtke J., Ziegenbalg S. B. , Brunner B. , Rouchy J. M. , Pierre C. , and Peckmann J. Authigenesis of native sulphur and dolomite in a lacustrine evaporitic setting (Hellín basin, Late Miocene, SE Spain). Geological Magazine (2011), 1-15. doi: 10.1017/S0016756811000124
2011	Wehrmann L.M., Templer S.P., Brunner B., Bernasconi S.M., Maignien L., and Ferdelman T.G. The imprint of methane seepage on the geochemical record and early diagenetic processes in cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz. Marine Chemistry (2011), 282, 118-137
2010	Pirlet H., Wehrmann L.M., Brunner B., Frank N., Dewanckele J., Van Rooij D., Foubert A., Swennen R., Naudts L., Boone M., Cnudde V., and Henriet JP. Diagenetic formation of gypsum and dolomite in a cold-water coral mound in the Porcupine Seabight, off Ireland Sedimentology (2010), 57, 786-805
2010	Riedinger N., Brunner B., Formolo M.J. , Solomon E., Kasten S., Strasser M., and Ferdelman T.G. Oxidative sulfur cycling in the deep biosphere of the Nankai Trough, Japan. Geology (2010), 38, 851-854
2010	Riedinger N., Brunner B., Lin Y.-S., Vossmeyer A., Ferdelman T.G. , and Jørgensen B.B. Methane at the sediment-water transition in Black Sea Sediments Chemical Geology (2010), 274, 29-37
2010	Turchyn A. V., Brüchert V., Lyons T.W., Engel G.S., Balci N., Schrag D.P., and Brunner B. Kinetic oxygen isotope effects during dissimilatory sulfate reduction: A combined theoretical and experimental approach Geochimica et Cosmochimica Acta (2010), 74, 2316-2326
2010	Ziegenbalg S.B., Brunner B., Rouchy J.M., Birgel D., Pierre C., Böttcher M.E., Caruso A., Immenhauser A., and Peckmann J. Formation of secondary carbonates and native sulphur in sulphate-rich Messinian strata, Sicily Sedimentary Geology (2010), 227, 37-50
2009	Arning, E.T., Birgel D., Brunner B. and Peckmann J. Bacterial formation of phosphatic laminites off Peru Geobiology (2009), 7, 295-307
2009	Holler T., Wegener G., Knittel K., Boetius A., Brunner B., Kuypers M.M.M., and F. Widdel F. Substantial 13C/12C and D/H fractionation during anaerobic oxidation of methane by marine consortia enriched in vitro Environmental Microbiology Reports (2009), 1, 370-376
2008	Brunner B., Yu J.-Y., Mielke R. E., MacAskill J., Madzunkov S., McGenity T. J., and Coleman M. L. Different isotope and chemical patterns of pyrite oxidation related to lag and exponential growth phases of Acidithiobacillus ferrooxidans reveal a microbial growth strategy Earth and Planetary Science Letters (2008), 270, 63-72
2008	Rohrssen, M., B. Brunner, R.E. Mielke, and Coleman M.L. Method for simultaneous oxygen and hydrogen isotope analysis of water of crystallization in hydrated minerals Analytical Chemistry (2008), 80, 7084-7089.
2007	Christensen L. E., Brunner B., Truong K. N., Mielke R. E., Webster C. R., Coleman, M. L. Measurements of Sulfur Isotope Compositions by Tunable Laser Spectroscopy of SO2 Analytical Chemistry (2007), 79, 9261-9268
2007	Wortmann U. G., Chernyavsky B., Bernasconi S. M., Brunner B., Boettcher M. E., and Swart P. K. Oxygen isotope biogeochemistry of pore water sulfate in the deep biosphere: Dominance of isotope exchange reactions with ambient water during microbial sulfate reduction (ODP Site 1130) Geochmica et Cosmochimica Acta (2007), 71, 4221-4232
2005	Brunner B. and Bernasconi S. M. A revised isotope fractionation model for dissimilatory sulfate reduction in sulfate reducing bacteria Geochimica et Cosmochimica Acta (2005), 69, 4759-4771
2005	Brunner B., Bernasconi S. M., Kleikemper J., and Schroth M. H. A model for oxygen and sulfur isotope fractionation in sulfate during bacterial sulfate reduction processes Geochimica et Cosmochimica Acta (2005), 69, 4773-4785
2004	Kleikemper J., Schroth M. H., Bernasconi S. M., Brunner B., and Zeyer J. Sulfur Isotope Fractionation during Growth of Sulfate Reducing Bacteria on Various Carbon Sources Geochimica et Cosmochimica Acta (2004), 68, 4891-4904
2002	Brunner B. Sedimentology, Stratigraphy und Paleogeography of Dogger in the Graustock Area West of Engelberg, Switzerland Mitteilungen der Naturforschenden Gesellschaft Luzern (2002), 37, 51-62