Publikationen 2005/2001

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Wallner SR, Bauer M, Würdemann C, Wecker P, Glöckner FO, Faber K (2005) Highly enantioselective sec-Alkylsulfatase activity of the marine Planctomycete Rhodopirellula baltica shows retention of configuration. Angew. Chem. Int. Ed. 44:2-4 (DOI:10.1002/anie.200501955)

Mussmann M, Richter M, Lombardot T, Meyerdierks A, Kuever J, Kube M, Glöckner FO, Amann R (2005) Clustered genes related to sulfate respiration in uncultured prokaryotes support the theory of their concomitant horizontal transfer. J. Bacteriol. 187:7126-7137 (DOI:10.1128/JB.187.20.7126-7137.2005)

Meyerdierks A, Kube M, Lombardot T, Knittel K, Bauer M, Glöckner FO, Reinhardt R, Amann R (2005) Insights into the genomes of archaea mediating the anaerobic oxidation of methane. Environ. Microbiol. 7:1937-1951 (DOI:10.1111/j.1462-2920.2005.00844.x)

Lombardot T, Bauer M, Teeling H, Amann R, Glöckner FO (2005) The transcriptional regulator pool of the marine bacterium Rhodopirellula baltica SH 1T as revealed by whole genome comparisons. FEMS Microbiol. Lett. 242:137-145 (DOI:10.1016/j.femsle.2004.10.049)

Kumar Y, Westram R, Behrens S, Fuchs B, Glöckner FO, Amann R, Meier H, Ludwig W (2005) Graphical representation of ribosomal RNA probe accessibility data using ARB software package. BMC Bioinformatics 6:61 (DOI:10.1186/1471-2105-6-61)

Gernert C, Glöckner FO, Krohne G, Hentschel U (2005) Microbial diversity of the freshwater sponge Spongilla lacustris. Microb. Ecol. 50:206-212  (DOI:10.1007/s00248-004-0172-x)

Gade D, Theiss D, Lange D, Mirgorodskaya E, Lombardot T, Glöckner FO, Kube M, Reinhardt R, Amann R, Lehrach H, Rabus R, Gobom J (2005) Towards the proteome of the marine bacterium Rhodopirellula baltica: Mapping the soluble proteins. Proteomics 5:3654-3671 (DOI:10.1002/pmic.200401201)

Babenzien H-D, Glöckner FO, Head IM (2005) Genus Achromatium Schewiakoff 1893, 1AL. In: Brenner DJ, Krieg NR, Staley JT (eds) Bergey's Manual of Systematic Bacteriology, 2nd Edition. Williams & Wilkens, Baltimore, USA, pp 142-147 (DOI:10.1002/9781118960608.gbm01222)

Teeling H, Waldmann J, Lombardot T, Bauer M, Glöckner FO (2004) TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences. BMC Bioinformatics 5:163 (DOI:10.1186/1471-2105-5-163)

Teeling H, Meyerdierks A, Bauer M, Amann R, Glöckner FO (2004) Application of tetranucleotide frequencies for the assignment of genomic fragments. Environ. Microbiol. 6:938-947 (DOI:10.1111/j.1462-2920.2004.00624.x)

Teeling H, Lombardot T, Bauer M, Ludwig W, Glöckner FO (2004) Evaluation of the phylogenetic position of the planctomycete "Rhodopirellula baltica SH 1" by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees. Int. J. Syst. Evol. Microbiol. 54:791-801 (DOI:10.1099/ijs.0.02913-0)

Rabus R et al. (2004) The genome of Desulfotalea psychrophila, a sulphate-reducing bacterium from permanently cold Arctic sediments. Environ. Microbiol. 6:887-902 (DOI:10.1111/j.1462-2920.2004.00665.x)

Peplies J, Lau SCK, Pernthaler A, Amann R, Glöckner FO (2004) Application and validation of DNA microarrays for the 16S rRNA-based analysis of marine bacterioplankton. Environ. Microbiol. 6:638-645 (DOI:10.1111/j.1462-2920.2004.00588.x)

Peplies J, Glöckner FO, Amann R, Ludwig W (2004) Comparative sequence analysis and oligonucleotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bacterioplankton. Syst. Appl. Microbiol. 27:573-580 (DOI:10.1078/0723202041748172)

Heuchert A, Glöckner FO, Amann R, Fischer U (2004) Psychrobacter nivimaris sp. nov.*, a heterotrophic bacterium attached to organic particles isolated from the South Atlantic (Antarctica). Syst. Appl. Microbiol. 27:399-406 (DOI:10.1078/0723202041438455)

Glöckner FO (2004) "Umweltgenomik mit Pirellula". Biospektrum 3:262-263

Gade D, Schlesner H, Glöckner FO, Amann R, Pfeiffer S, Thomm M (2004) Identification of Planctomycetes with order-, genus- and strain-specific 16S rRNA-targeted probes. Microb. Ecol. 47:243-251 (DOI:10.1007/s00248-003-1016-9)

Cypionka H, Babenzien HD, Glöckner FO, Amann R (2004) The Genus Nevskia. In: Prokaryotes (DOI:10.1007/0-387-30746-x_46)

Brinkmeyer R, Glöckner FO, Helmke E, Amann R (2004) Predominance of beta-proteobacteria in summer melt pools on Arctic pack ice. Limnol. Oceanogr. 49:1013-1021 (DOI:10.4319/lo.2004.49.4.1013)

Bauer M, Lombardot T, Teeling H, Naomi LW, Amann RI, Glöckner FO (2004) Phylogenetic implications of the unexpected presence of archaeal-like genes for C1 transfer enzymes in Planctomycetes. J. Mol. Evol. 59:571-586 (DOI:10.1007/s00239-004-2643-6)

Peplies J, Glöckner FO, Amann R (2003) Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes. Appl. Environ. Microbiol. 69:1397-1407 (DOI:10.1128/AEM.69.3.1397-1407.2003)

Krüger M, Meyerdierks A, Glöckner FO, Amann R, Widdel F, Kube M, Reinhardt R, Kahnt R, Bocher R, Thauer RK, Shima S (2003) A conspicuous nickel protein in microbial mats that oxidize methane anaerobically. Nature 426:878-881 (DOI:10.1038/nature02207)

Kniemeyer O, Fischer T, Wilkes H, Glöckner FO, Widdel F (2003) Anaerobic degradation of ethylbenzene by a new type of marine sulfate-reducing bacterium. Appl. Environ. Microbiol. 69:760-768 (DOI:10.1128/AEM.69.2.760-768.2003)

Glöckner FO, Kube M, Bauer M, Teeling H, Lombardot T, Ludwig W, Gade D, Beck A, Borzym K, Heitmann K, Rabus R, Schlesner H, Amann R, Reinhardt R (2003) Complete genome sequence of the marine planctomycete Pirellula sp. strain 1. Proc. Natl. Acad. Sci. USA 100:8298-8303 (DOI:10.1073/pnas.1431443100)

Richter E, Niemann S, Glöckner FO, Pfyffer GE, Rusch-Gerdes S (2002) Mycobacterium holsaticum sp. nov. Int. J. Syst. Evol. Microbiol. 52:1991-1996 (DOI:10.1099/00207713-52-6-1991

Rabus R, Gade D, Helbig R, Bauer M, Glöckner FO, Kube M, Schlesner H, Reinhardt R, Amann R (2002) Analysis of N-acetylglucosamine metabolism in the marine bacterium Pirellula sp. strain 1 by a proteomic approach. Proteomics 2:649-655 (DOI:10.1002/1615-9861(200206)2:6<649::AID-PROT649>3.0.CO;2-R)

Surkov AV, Dubinina GA, Lysenko AM, Glöckner FO, Kuever J (2001) Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus sp. nov. and Dethiosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments. Int. J. Syst. Evol. Microbiol. 51:327-337 (DOI:10.1099/00207713-51-2-327)

Pernthaler J, Posch T, Simek K, Vrba J, Pernthaler A, Glöckner FO, Nübel U, Psenner R, Amann R (2001) Predator-specific enrichment of actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Appl. Environ. Microbiol. 67:2145-2155 (DOI:10.1128/AEM.67.5.2145-2155.2001)

Pernthaler J, Glöckner FO, Schönhuber W, Amann R (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. In: Methods in Microbiology. Academic Press Inc, San Diego, pp 207-226 (DOI:10.1016/S0580-9517(01)30046-6)

Eilers H, Pernthaler J, Peplies J, Glöckner FO, Gerdts G, Amann R (2001) Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Appl. Environ. Microbiol. 67:5134-5142 (DOI:10.1128/AEM.67.11.5134-5142.2001)

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