Publications 2014

Yilmaz, P., L. W. Parfrey, P. Yarza, J. Gerken, E. Pruesse, C. Quast, T. Schweer, J. Peplies, W. Ludwig, and F. O. Glöckner. 2014. The SILVA and "All-species Living Tree Project (LTP)" taxonomic frameworks. Nucleic Acid Res. 42:D643-D648 (DOI:10.1093/nar/gkt1209)

Yarza, P., P. Yilmaz, E. Pruesse, F. O. Glöckner, W. Ludwig, K. H. Schleifer, W. B. Whitman, J. Euzeby, R. Amann, and R. Rossello-Mora. 2014. Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences. Nature Rev. Microbiol. 12:635-645 (DOI:10.1038/nrmicro3330)

Werner, J., M. Ferrer, G. Michel, A. J. Mann, S. Huang, S. Juarez, S. Ciordia, J. P. Albar, M. Alcaide, V. La Cono, et al. 2014. Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader. Environ. Microbiol. 16:2525-2537 (Doi:10.1111/1462-2920.12393)

Wegner, C.-E., M. Richter, T. Richter-Heitmann, A. Klindworth, C. S. Frank, F. O. Glöckner, and J. Harder (2014). Permanent draft genome of Rhodopirellula sallentina SM41. Marine Genomics 13:17-18 (DOI:10.1016/j.margen.2013.11.002)

Waldmann, J., J. Gerken, W. Hankeln, T. Schweer and F. O. Glöckner (2014). FastaValidator: an open-source Java library to parse and validate FASTA formatted sequences. BMC research notes 7:365 (DOI:10.1186/1756-0500-7-365)

Richter-Heitmann, T., M. Richter, A. Klindworth, C.-E. Wegner, C. S. Frank, F. O. Glöckner, and J. Harder (2014) Permanent draft genomes of the two Rhodopirellula europaea strains 6C and SH398. Marine Genomics 13:15-16.(Doi: 10.1016/j.margen.2013.11.003)

M. Richter, T. Richter-Heitmann, A. Klindworth, C.-E. Wegner, C. S. Frank, J. Harder, and F. O. Glöckner (2014). Permanent draft genomes of the three Rhodopirellula baltica strains SH28, SWK14 and WH47. Marine Genomics 13:13-14.(DOI:10.1016/j.margen.2013.11.004)

Richter, M., T. Richter-Heitmann, A. Klindworth, C.-E. Wegner, C. S. Frank, J. Harder, and F. O. Glöckner (2014). Permanent draft genomes of the Rhodopirellula maiorica strain SM1. Marine Genomics 13:19-20 (DOI:10.1016/j.margen.2013.11.001.)

Kyrpides, N. C., P. Hugenholtz, J. A. Eisen, T. Woyke, M. Goker, C. T. Parker, R. Amann, B. J. Beck, P. S. Chain, J. Chun, et al. (2014) Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains. PLoS Biol 12:e1001920. (DOI:10.1371/journal.pbio.1001920)

Kolinko, S., M. Richter, F. O. Glöckner, A. Brachmann, and D. Schüler (2014). Single-cell genomics reveals potential for magnetite and greigite biomineralization in an uncultivated multicellular magnetotactic prokaryote. Environ. Microbiol. 6:524-531 (DOI:10.1111/1758-2229.12198)

Klindworth, A., J. Schnetzer, I. Kostadinov, R. Kottmann, and F. O. Glöckner (2014) Ocean Sampling Day: Genomische Schatzsuche im Meer. BIOspektrum 20:351-353 (DOI:10.1007/s12268-014-0448-8)

Klindworth, A., M. Richter, T. Richter-Heitmann, C.-E. Wegner, C. S. Frank, J. Harder, and F. O. Glöckner (2014) Permanent draft genome of Rhodopirellula rubra SWK7. Marine Genomics 13:11-12 (DOI:10.1016/j.margen.2013.11.005)

A. Klindworth, A. J. Mann, S. Huang, A. Wichels, C. Quast, J. Waldmann, H. Teeling, and F. O. Glöckner (2014) Diversity and activity of marine bacterioplankton during a diatom bloom in the North Sea assessed by total RNA and pyrotag sequencing. Marine Genomics 18:185-192 (DOI:10.1016/j.margen.2014.08.007.)

Jan, C., J. M. Petersen, J. Werner, H. Teeling, S. Huang, F. O. Glöckner, O. V. Golyshina, N. Dubilier, P. N. Golyshin, M. Jebbar, et al. (2014). The gill chamber epibiosis of deep-sea shrimp Rimicaris exoculata: an in-depth metagenomic investigation and discovery of Zetaproteobacteria. Environ. Microbiol. 16:2723-2738 (DOI:10.1111/1462-2920.12406.)

Harrington, C., F. J. Reen, M. J. Mooij, F. A. Stewart, J.-B. Chabot, A. F. Guerra, F. O. Glöckner, K. F. Nielsen, L. Gram, and A. D. Dobson (2014) Characterisation of Non-Autoinducing Tropodithietic Acid (TDA) Production from Marine Sponge Pseudovibrio Species. Marine drugs 12:5960-5978 (DOI:10.3390/md12125960)

Field, D., P. Sterk, R. Kottmann, J. W. De Smet, L. Amaral-Zettler, G. Cochrane, J. R. Cole, N. Davies, P. Dawyndt, G. M. Garrity, et al. (2014) Genomic standards consortium projects. SIGS 9:599-601 (DOI:10.4056/sigs.5559680.)

Diepenbroek, M., F. O. Glöckner, P. Grobe, A. Güntsch, R. Huber, B. König-Ries, I. Kostadinov, J. Nieschulze, B. Seeger, R. Tolksdorf, et al. (2014) Towards an Integrated Biodiversity and Ecological Research Data Management and Archiving Platform: The German Federation for the Curation of Biological Data (GFBio), p. 1711-1724. In E. Plödereder, L. Grunske, E. Schneider, and D. Ull (ed.), Informatik 2014 – Big Data Komplexität meistern, vol. 232. Köllen Verlag, Bonn

Davies, N., D. Field, L. Amaral-Zettler, M. S. Clark, J. Deck, A. Drummond, D. P. Faith, J. Geller, J. Gilbert, F. O. Glöckner et al. (2014) The founding charter of the Genomic Observatories Network. GigaScience 3:1-5 (DOI:10.1186/2047-217X-3-2)

Davies, N., D. Field, L. Amaral-Zettler, K. Barker, M. Bicak, S. Bourlat, J. Coddington, J. Deck, A. Drummond, J. A. Gilbert, et al. (2014) Report of the 14th Genomic Standards Consortium Meeting, Oxford, UK, September 17–21, 2012. SIGS 9:1236-1250 (DOI:10.4056/sigs.4319681)