Publications 2016

Yilmaz P, Yarza P, Rapp JZ, Glöckner FO (2016) Expanding the World of Marine Bacterial and Archaeal Clades. Frontiers in Microbiology 6:1-29 (DOI: 10.3389/fmicb.2015.01524)

Winkel M, Carvalho V, Woyke T, Richter M, Schulz-Vogt HN, Flood B, Bailey J, Mußmann M (2016) Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions. Frontiers in Microbiology 7 (DOI: 10.3389/fmicb.2016.00964)

Varsos C et al. (2016) Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab). Biodiversity Data Journal:e8357 (DOI:10.3897/BDJ.4.e8357)

Tsesmetzis N, Yilmaz P, Marks PC, Kyrpides NC, Head IM, Lomans BP (2016) MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources. Stand Genomic Sci 11:78 (DOI:10.1186/s40793-016-0203-5)

ten Hoopen P, Ramona LW, Ethalinda KSC, Guy C, James C, Anjanette J, Ilene K-M, Pelin Y (2016) Supporting data for "Plant Specimen Contextual Data Consensus". In. GigaScience Database (DOI:10.5524/100250)

Teeling H et al. (2016) Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. eLife 5:e11888 (DOI:10.7554/eLife.11888)

Tauch A, Glöckner FO (2016) de.NBI und GFBio. labor&more 2:9-12

Sinclair L, Ijaz UZ, Jensen LJ, Coolen MJL, Gubry-Rangin C, Chroňáková A, Oulas A, Pavloudi C, Schnetzer J, Weimann A, Ijaz A, Eiler A, Quince C, Pafilis E (2016) Seqenv: linking sequences to environments through text mining. PeerJ 4:e2690 (DOI:10.7717/peerj.2690)

Schnetzer J, Kopf A, Bietz MJ, Buttigieg PL, Fernandez-Guerra A, Ristov AP, Glöckner FO, Kottmann R (2016) MyOSD 2014: Evaluating Oceanographic Measurements Contributed by Citizen Scientists in Support of Ocean Sampling Day †. J. Microbiol. Biol. Educ. 17:163-171 (DOI:10.1128/jmbe.v17i1.1001)

Romano S, Fernàndez-Guerra A, Reen FJ, Glöckner FO, Crowley SP, O'Sullivan O, Cotter PD, Adams C, Dobson ADW, O'Gara F (2016) Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus. Frontiers in Microbiology 7:387 (DOI:10.3389/fmicb.2016.00387)

Richter M, Rosselló-Móra R, Glöckner FO, Peplies J (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929-931 (DOI:10.1093/bioinformatics/btv681)

Rat für Informationsinfrastrukturen (RfII), Glöckner FO (2016) Leistung aus Vielfalt www.rfii.de (Download)

Meier D, Bach W, Girguis PR, Gruber-Vodicka H, Reeves EP, Richter M, Vidoudez C, Amann R, Meyerdierks A (2016) Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting. Environ Microbiol:online (DOI:10.1111/1462-2920.13304)

Martinez-Perez C, Mohr W, Loscher CR, Dekaezemacker J, Littmann S, Yilmaz P, Lehnen N, Fuchs BM, Lavik G, Schmitz RA, LaRoche J, Kuypers MM (2016) The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle. Nature microbiology 1:16163 (DOI:10.1038/nmicrobiol.2016.163)

Krukenberg V, Harding K, Richter M, Glöckner FO, Gruber-Vodicka HR, Adam B, Berg JS, Knittel K, Tegetmeyer HE, Boetius A, Wegener G (2016) Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environ. Microbiol.:online (DOI:10.1111/1462-2920.13283)

Kozlov AM, Zhang J, Yilmaz P, Glöckner FO, Stamatakis A (2016) Phylogeny-aware identification and correction of taxonomically mislabeled sequences. Nucleic Acid Res. (DOI:10.1093/nar/gkw396)

Kottman R, Glöckner FO (2016) Erkennisse aus einem Meer an Daten. Wie die Systembiologie zum Verständnis mariner Ökosysteme beiträgt. Systembiologie 11:8-11

Kopf A, Schnetzer J, Glöckner FO (2016) Understanding Marine Microbes, the Driving Engines of the Ocean. Ocean. Front Young Minds. 4:1-9 (DOI:10.3389/frym.2016.00001)

Hardisty AR et al. (2016) BioVeL: a virtual laboratory for data analysis and modelling in biodiversity science and ecology. BMC ecology 16:49 (DOI:10.1186/s12898-016-0103-y)

Federhen S et al. (2016) Meeting report: GenBank microbial genomic taxonomy workshop (12--13 May, 2015). SIGS:11-15 (DOI:10.1186/s40793-016-0134-1)

Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, Pjevac P, Probandt D, Richter M, Stepanauskas R, Muszmann M (2016) Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME J:online (DOI:10.1038/ismej.2015.257)

Droege G et al. (2016) The Global Genome Biodiversity Network (GGBN) Data Standard specification. Database 2016:baw125-baw125 (DOI:10.1093/database/baw125)

Casaregola S, Vasilenko A, Romano P, Robert V, Ozerskaya S, Kopf A, Glöckner FO, Smith D (2016) An Information System for European culture collections: the way forward. SpringerPlus 5:772 (DOI:10.1186/s40064-016-2450-8.)

Busch J, Bardaji R, Ceccaroni L, Friedrichs A, Piera J, Simon C, Thijsse P, Wernand M, van der Woerd H, Zielinski O (2016) Citizen Bio-Optical Observations from Coast- and Ocean and Their Compatibility with Ocean Colour Satellite Measurements. Remote Sensing 8:879 (DOI:10.3390/rs8110879)

Barbeyron T, Thomas F, Barbe V, Teeling H, Schenowitz C, Dossat C, Goesmann A, Leblanc C, Glöckner FO, Czjzek M, Amann R, Michel G (2016) Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT. Environ. Microbiol. 18:4610-4627 (DOI:10.1111/1462-2920.13584)