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Publications 2008

Publications 2008

Department of Biogeochemistry

Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B. B. Jørgensen, A. Larson and J. Peckmann: Lipid biomarker patterns of phosphogenic sediments for upwelling regions. Geomicrobiology Journal 25(2):69-82 (2008). TFO
Boudreau, B. P., C. Arnosti, B. B. Jørgensen and D. E. Canfield: Comment on "Physical Model for the Decay and Preservation of Marine Organic Carbon". Science 319:1616b (2008). PubMed Full Text
Dale, A. W., D. R. Aguilera, P. Regnier, H. Fossing, N. J. Knab and B. B. Jørgensen: Seasonal dynamics of the depth and rate of anaerobic oxidation of methane in Aarhus Bay (Denmark) sediments. Journal of Marine Research 66:127-155 (2008). IC
Dale, A. W., P. Regnier, N. J. Knab, B. B. Jørgensen and P. Van Cappellen: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling. Geochimica et Cosmochimica Acta 72:880–2894 (2008). ScienceDirect
Finke, N. and B. B. Jørgensen: Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. The ISME Journal 2: 815-829 (2008). PubMed Full Text
Furrer H., Schaltegger U., Ovtcharova M. and P. Meister: U-Pb zircon age of volcaniclastic layers in Middle Triassic platform carbonates of the Austroalpine Silvretta nappe (Switzerland). Swiss J. Geosci. 101:595–603 (2008). Springer Full Text
Khalili, A., K. Javadi, A. Saidi, A. Goharzadeh, M. Huettel and B. B. Jørgensen: On generating uniform bottom shear stress. Part I: A quantitative study of microcosm chambers. Recent Patents on Chemical Engineering 1:174-191 (2008). BenthamScience Full Text
Knab, N. J., A. W. Dale, K. Lettmann, H. Fossing and B. B. Jørgensen: Thermodynamic and kinetic control on anaerobic oxidation of methane in marine sediments. Geochimica et Cosmochimica Acta 72:3746-3757 (2008). ScienceDirect
Knab, N. J., B. A. Cragg, C. Borowski, R. J. Parkes, R. Pancost and B. B. Jørgensen: Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): I. Geochemical and microbiological analyses. Geochimica et Cosmochimica Acta 72:2868–2879 (2008). ScienceDirect
Knab, N. J., B. A. Cragg, E.R.C. Hornibrook, L. Holmkvist, C. Borowski, R. J. Parkes and B. B. Jørgensen: Regulation of anaerobic methane oxidation in sediments of the Black Sea. Biogeosciences Discuss. 5:2305-2341 (2008). ORCA Full Text
Meister, P., Bernasconi, S.M., Vasconcelos, C. and McKenzie, J.A.: Sealevel changes control diagenetic dolomite formation in hemipelagic sediments of the Peru Margin. Marine Geology 252(3-4):166-173 (2008). ScienceDirect
Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B. B. Jørgensen and M. M. M. Kuypers: A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861-17866 (2008). PubMed Full Text
Nickel, M., V. Vandieken, V. Brüchert and B. B. Jørgensen: Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition. Deep-Sea Research II 55:2390-2398 (2008). USD
Neubert N., Nägler T.F. and Böttcher M.E.: Sulfidity controls molybdenum isotope discrimination into euxinic sediments: Evidence from the modern Black Sea. Geology 36:775-778 (2008). Geology
Schwermer, C.U., Lavik, G., Abed, R.M.M., Dunsmore, B., Ferdelman, T.G., Stoodley, P., Gieseke, A., de Beer, D.: Sea-level changes control of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Appl.and Environ. Microbiol. 74:2841-285 (2008).
Wild, C., Mayr, C., Wehrmann, L., Schöttner, S.I., Naumann, M., Hoffmann, F. and Rapp, H.T.: Organic matter release by cold water corals and its implication for fauna–microbe interaction. Marine Ecology Progress Series 372:67-75 (2008). MEPS
B.Sc theses
Landwehrkamp, Lukas: Determination of in situ methane concentrations in marine sediments by analysis of void gas with gas chromatography. University of Essen (2008).
M.Sc theses
Voßmeyer, Antje: Effects of Pressure on Deep Sea Anaerobic Biogeochemical Processes. (2008).
Ph.D. theses
Julies, Elsabé M.: Microbial ecology of anaerobic carbon mineralization in Namibian shelf sediments. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 183pp.
Schläppy, Marie-Lise:Chemical micro-environments, ventilation behavior and microbial processes in sponges. Dissertation Universität Bremen, Bremen (2008), 155pp.

Microsensor Group

Abed, R. M. M., Kohls K., Schoon R., Scherf A. K., Schacht M., Palinska K. A., Al-Hassani H., Hamza W., Rullkotter J., Golubic S.: Lipid biomarkers, pigments and cyanobacterial diversity of microbial mats across intertidal flats of the arid coast of the Arabian Gulf (Abu Dhabi, UAE). FEMS Microbiology Ecology 65(3):449-462 (2008). PubMed
Bachar, A., Polerecky L., Fisher J., Vamvakopoulos K., de Beer D., Jonkers H.M.: Two-dimensional mapping of photopigment distribution and activity of Chloroflexus-like bacteria in a hypersaline microbial mat. FEMS Microb. Ecol. 65:434-448 (2008). PubMed
Beutler, M., Makrogianneli K., Vermeij R.J., Keppler M., Ng T., Jovin T.M. and Heintzmann R.: satFRET: estimation of Förster resonance energy transfer by acceptor saturation. Eur. Biophys. J. 38(1):69-82 (2008). PubMed Full Text
Bissett, A., de Beer D., Schoon R., Shiraishi F., Reimer A., Arp G.: Microbial mediation of stromatolite formation in karst-water creeks. Limnol. Oceanogr. 53(3):1159-1168 (2008). ASLO Full Text
Bissett, A., Reimer A., de Beer D., Shiraish, F., Arp G.: Metabolic microenvironmental control by photosynthetic biofilms under changing macroenvironmental temperature and pH conditions. Appl. Environm. Microbiol. 74(20):6306-6312 (2008). PubMed Full Text
Bissett, A., Bowman, J.P., Burke, C.M.: Flavobacterial response to organic pollution. Aquatic Microbial Ecology 51(1):31-43 (2008). PubMed Full Text
de Beer, D., Bissett A., de Wit R., Jonkers H., Köhler-Rink S., Nam H., Kim B.H., Eickert G., and Grinstain M.: A microsensor for carbonate ions suitable for microprofiling in freshwater and saline environments. Limnol Oceanogr Methods 6:532-541 (2008). ASLO Full Text
De Deckker, P., Abed R. M. M., de Beer D., Hinrichs K.-U., O'Loingsigh T., Schefuß E., Stuu, J. W., Tapper N.J., van der Kaars S.: Geochemical and microbiological fingerprinting of airborne dust that fell in Canberra, Australia, in October 2002. Geochem. Geophys. Geosyst. 9(12):doi:10.1029/2008GC002091, 1-22 (2008). Wiley Full Text
Foesel, B. U., Gieseke A., Schwermer C., Stief P., Koch L., Cytryn E., de la Torré J. R., van Rijn J., Minz D., Drake H. L., Schramm A.: Nitrosomonas Nm143-like ammonia oxidizers and Nitrospira marina-like nitrite oxidizers dominate the nitrifier community in a marine aquaculture biofilm. FEMS Microbiology Ecology 63(2):192-204 (2008). PubMed
Grossart, H.-P., Jezbera J., K. Hornák, K.M.L. Hutalle, U. Buck and K Šimek: Top-down and bottom-up induced shifts in bacterial abundance, production and community composition in an experimentally divided humic lake. Environmental Microbiology 10(3):635-652 (2008). PubMed
Hoffmann, F., Røy H., Bayer K., Hentschel U., Pfannkuchen M., Brümmer F., de Beer D.: Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba. Mar. Biol. 153:1257-1264 (2008). PubMed Full Text
Hoffmann F., Schläppy M.-L.: Sponges (Porifera) and sponge microbes. In: Encyclopedia of Geobiology, Heidelberg, Springer Verlag (2008).
Humphrey, C., Weber M., Lott C., Cooper T., Fabricius K.: Effects of suspended sediments, dissolved inorganic nutrients and salinity on fertilisation and embryo development in the coral Acropora millepora (Ehrenberg, 1834). Coral Reefs 27(4):837-850 (2008). Springer Full Text
Jansen, S., Walpersdorf E., Werner U., Billerbeck M., Boettcher M., de Beer D.: Functioning of tidal flats as inferred from temporal and spatial dynamics of O2, H2S an pH in their surface sediments. Ocean Dynamics, doi 10.1007/s10236-009-0179-4 (2008). Springer Full Text
Kühl, M., Polerecky L.: Functional and structural imaging of phototrophic microbial communities and symbioses. Aquatic Microbial Ecology 53:99-118 (2008). PubMed Full Text
Martí­nez-Garcí­a, M., Stief P., Dí­az-Valdés M., Wanner G., Ramos-Esplá A., Dubilier N., Antón J.: Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environmental Microbiology 10(11):2991-3001 (2008). PubMed Full Text
Ploug, H., Iversen M.H., Koski M., Buitenhuis E.T.: Production, oxygen respiration rates, and sinking velocity of copepod fecal pellets: direct measurements of ballasting by opal and calcite. Limnol. Oceanogr. 53(2):469-476 (2008). ASLO Full Text
Ploug, H.: Cyanobacterial surface blooms formed by Aphanizomenon sp. and Nodularia spumigena in the Baltic Sea: Small-scale fluxes, pH, and oxygen microenvironments. Limnol Oceanogr. 53:914-921 (2008). ASLO Full Text
Polerecky, L., Lott C., Weber M.: In situ measurement of gross photosynthesis using a microsensor-based light-shade shift method. Limnology and Oceanography-Methods 6:373-383 (2008). Full Text
Polerecky, L., Bissett A., Al-Najjar M., Faerber P., Osmers H., Suci P. A., Stoodley P., de Beer D.: Modular spectral imaging system for discrimination of pigments in cells and microbial communities. Appl. Environm. Microbiol. 75(3):758-771 (2008). PubMed Full Text
Schreiber, F., Polerecky L., de Beer D.: Nitric oxide microsensor for high spatial resolution measurements in biofilms and sediments. Anal. Chem. 80(4):1152-1158 (2008). PubMed
Schwermer, C.U., Lavik G., Abed R. M. M., Dunsmore B., Ferdelman T.G., Stoodley P., Gieseke A., de Beer D.: Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Appl. Environm. Microbiol. 74(9):2841-2851 (2008). PubMed Full Text
Sher, Y., Schneider K., Schwermer C.U., van Rijn J.: Sulfide-induced nitrate reduction in the sludge of an anaerobic digester of a zero-discharge recirculating mariculture system. Wat. Res. 42(16):4386-4392 (2008). PubMed
Shiraishi, F., A. Bissett, D. de Beer, A. Reimer and G. Arp: Photosynthesis, respiration and exopolymer Calcium-binding in biofilm calcification (Westerhöfer and Deinschwanger Creek, Germany). Geomicrobiology Journal 25:83-94 (2008). TFO
Shiraishi, F., Reimer A., Bisset A., de Beer D., and Arp G.: Microbial effects on biofilm calcification, ambient water chemistry and stable isotope records in a highly supersaturated setting (Westerhöfer Bach, Germany). Palaeogeography, Palaeoclimatology and Palaeoecology 262(1-2):91-106 (2008). ScienceDirect
Stoodley, P., Wefel, J., Gieseke A., de Beer D., von Ohle C.: Biofilm Plaque and Hydrodynamic Effects on Mass Transfer, Fluoride Delivery and Caries. JADA 139(9):1182-1190 (2008). PubMed
Werner, U., Blazejak A., Bird P., Eickert G., Schoon R., Abed R. M. M., Bissett A., de Beer D.: Microbial photosynthesis in coral reef sediments (Heron Reef, Australia). Estuarine, Coastal and Shelf Science 76(4):876-888 (2008). ScienceDirect
Diploma, M.Sc and B.Sc theses
Ehrenberg, Julia: Einfluss von Stickstoffmonoxid auf den Stickstoffkreislauf in Süßwassersedimenten. Diplomarbeit FH Wiesbaden, Umweltechnik (2008).
Kopiniok, Celina: Denitrification Induced Calcification in Saline Biofilms. (2008).
Nemeki, Stella: Comparative Study of Benthic Respiration in Silicate and Carbonate Sands of the Islands Elba and Pianosa (Tyrrhenian Sea, Italy). (2008).
Sivelgen, Duygu: Comparative Study of Benthic Primary Production in Silicate and Carbonate Sands of the Islands Elba and Pianosa (Tyrrhenian Sea, Italy). (2008).

Microbial Habitat Group

Allers, E., C. Niesner, C. Wild and J. Pernthaler: Microbes enriched in seawater after addition of coral mucus. Appl. Environ. Microbiol. 74(10):3274-3278 (2008). PubMed Full Text
Amaral-Zettler, L., J. Peplies, A. Ramette, B. Fuchs, W. Ludwig and F. O. Glöckner: Proceedings of the international workshop on Ribosomal RNA technology, April 7–9, 2008, Bremen, Germany. Syst. Appl. Microbiol. 31:258-268 (2008). PubMed
Bachar, A., L. Polerecky, J.P. Fischer, K. Vamvakopoulos, D. de Beer and H. Jonker: Two-dimensional mapping of photopigments distribution and activity of Chloroflexus-like bacteria in a hypersaline microbial mat. FEMS Microbiology Ecology 65:434-448 (2008). PubMed
Bayer K., A. Siegl, S. Schmitt, F. Hoffmann and U. Hentschel: Unravelling microbial diversity and metabolism in marine sponges. Nova Acta Leopoldina 96:71-78 (2008).
Böer, S. I., C. Arnosti, J. E. E. van Beusekom and A. Boetius: Temporal variations in microbial activities and carbon turnover in subtidal sandy sediments. Biogeosciences Discussions 5:4271-4313 (2008). Biogeosciences Full Text
Boetius, A., T. Holler, K. Knittel, J. Felden and F.Wenzhöfer: The seabed as natural laboratory: Lessons from uncultivated methanotrophs. pp. 59-82, In: Uncultivated Microorganisms. Microbiology Monographs, S. Epstein (ed.), Springer Verlag (2008). Springer
Dupré, S., G. Buffet, J. Mascle, J.-P. Foucher, S. Gauger, A. Boetius, C. Marfia, the AsterX Team, the Quest ROV Teamandthe BIONIL Scientific Party: High-resolution mapping of large gas emitting mud volcanoes on the Egyptian continental margin (Nile Deep Sea Fan) by AUV surveys. Marine Geophysical Researches 29:275-290 (2008). Springer Full Text
Elvert, M. and H. Niemann: Occurrence of unusual steroids and hopanoids derived from aerobic methanotrophs at an active marine mud volcano. Org. Geochem. 39:167-177 (2008). ScienceDirect
Engelen, B., K. Ziegelmüller, L. Wolf, B. Köpke, A. Gittel, H. Cypionka, T. Treude, S. Nakagawa, F. Inagaki, M. A. Lever and B. O. Steinsbu: Fluids from the oceanic crust support microbial activities within the deep biosphere. Geomicrobiol. J. 25:56-66 (2008). TFO
Evrard, V., P. L. M. Cook, B. Veuger, M. Huettel, and J. J. Middelburg: Tracing carbon and nitrogen incorporation and pathways in the microbial community of a photic subtidal sand. Aquat. Microb. Ecol. 53:257-269 (2008). AME
Hoffmann, F., H. Røy, K. Bayer, U. Hentschel, M. Pfannkuchen, F. Brümmer, and D. de Beer: Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba. Mar. Biol. 153:1257-1264 (2008). PubMed Full Text
Jacobs, J. L., A. C. Fasi, A. Ramette, J. J. Smith, R. Hammerschmidt and G. W. Sundin: Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil. Appl. Environ. Microbiol. 74(10):3121-3129 (2008). PubMed Full Text
Kamp, A., H. Røy, and H. N. Schulz-Vogt: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microb. Ecol. 56:484-491 (2008). PubMed Full Text
Kanzog, C., A. Ramette, N. V. Quéric, and M. Klages: Response of benthic microbial communities to chitin enrichment: an in situ study in the deep Arctic Ocean. Polar Biol. 32:105-112 (2008). Springer Full Text
Lösekann, T., A. Robador, H. Niemann, K. Knittel, A. Boetius, and N. Dubilier: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10(12):3237-3254 (2008). PubMed
Niemann H. and M. Elvert: Diagnostic lipid biomarker and stable carbon isotope signatures of microbial communities mediating the anaerobic oxidation of methane with sulphate. Org. Geochem. 39:1668-1677 (2008). ScienceDirect
Omoregie, E. O., V. Mastalerz, G. de Lange, K. L. Straub, A. Kappler, H. Røy, A. Stadnitskaia, J.-P. Foucher and A. Boetius: Biogeochemistry and community composition of iron- and sulfur-precipitating microbial mats at the Chefren Mud Volcano (Nile Deep Sea Fan, Eastern Mediterranean) Appl. Environ. Microbiol. 74(10):3198-3215 (2008). PubMed Full Text
Rossel, P. E., J. S. Lipp, H. F. Fredricks, J. A. Arnds, A. Boetius, M. Elvert and K.-U. Hinrichs: Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria. Org. Geochem. 39:992-999 (2008). ScienceDirect
Røy H., J. S. Lee, S. Jansen and D. de Beer: Tide-driven deep porewater flow in intertidal sand flats. Limnol. Oceanogr. 53(4):1521-1530 (2008). TNO Full Text
Sweetman, A. K. and U. Witte: Response of an abyssal macrofaunal community to a phytodetrital pulse. Mar. Ecol. Prog. Ser. 355:73-84 (2008). MEPS
Sweetman, A. K. and U. Witte: Macrofaunal response to phytodetritus in a bathyal Norwegian fjord. Deep-Sea Res. I 55:1503-1514 (2008). ScienceDirect
Wegener, G., H. Niemann, M. Elvert, K.-U. Hinrichs and A. Boetius: Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane. Environ. Microbiol. 10(9):2287-2298 (2008). PubMed
Wegener, G., M. Shovitri, K. Knittel, H. Niemann, M. Hovland, and A. Boetius: Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea). Biogeosciences. 5:1127–1144 (2008). EBSCO Full Text
Wild, C., C. Mayr, L. M. Wehrmann, S. Schöttner, M. Naumann, F. Hoffmann and H. T. Rapp: Organic matter release by cold water corals and its implication for fauna-microbe interaction. Mar. Ecol. Prog. Ser. 372:67-75 (2008). MEPS
Diploma, M.Sc and B.Sc theses
Girnth, Anne-Christin: Diversity of sulfide-oxidizing bacteria at Amon Mud Volcano. Leibniz Universität Hannover (2008), 130pp.
Pfitzner, Barbara: Vergleichende Untersuchungen der bakteriellen Gemeinschaft in Riffsanden verschiedener Mineralstruktur. LMU München (2008).
Ufkes, Judith: Impact of increased carbon dioxide concentration on the structure of microbial communities in marine sediments. Diplomarbeit Universität Bremen, Bremen (2008), 108pp.
Ph.D. theses
Böer, Simone: Investigation of the distribution and activity of benthic microorganisms in coastal habitats. Dissertation Universität Bremen, Bremen (2008), 217pp.
Wegener, Gunter: Methane Oxidation and Carbon Assimilation in Marine Sediments. Dissertation Universität Bremen, Bremen (2008), 153pp.

Mathematical Modeling Group

Alam, M. and Khalili A.: Instabilities and patterns in horizontally oscillating particulate suspension. Physical Review E, doi: 10.1103/PhysRevE.77041305 (2008). PubMed
Khalili, A.: Mathematical modeling of dynamic processes in marine systems. Research Report of Max Planck Society (2008).
Khalili, A., Javadi K., Said A., Goharzadeh A., Huettel M. and Jørgensen B.B.: On Generating Uniform Bottom Shear Stress, Part I: A Quantitative Study of Microcosm Chambers. Recent Patents on Chemical Engineering 1(3):174-191 (2008). BenthamScience Full Text
Liu, B. and Khalili A.: Acceleration of steady-state lattice Boltzmann simulations for exterior flows. Physical Review E, doi: 10.1103/PhysRevE.78.056701 (2008). PubMed
Matyka, M., Khalili A. and Koza Z.: Tortuosity-porosity relation in porous media flow. Physical Review E, doi: 10.1103/PhysRevE.78.026306 (2008). PubMed
Morad, M.R. and Khalili A.: Transition layer thickness in a fluid-porous medium of multi-sized spherical beads. Experiments in Fluids 46(2):323-330 (2008). Springer Full Text

Department of Microbiology

Amann, R., W. Goebel, B. Reinhold-Hurek, B. Schink, and F. Widdel (eds.): Life strategies of microorganisms in the environment and in host organisms. Nova Acta Leopoldina NF 96: 356 (2008). Leopoldia
Faivre, D., N. Menguy, M. Pósfai and D. Schüler: Environmental parameters affect the physical properties of fast-growing magnetosomes. American Mineralogist 93:463-469 (2008). HAL
Grundmann, O., Behrends A., Rabus R., Amann J., Halder T., Heider J., Widdel, F.: Genes encoding the candidate enzyme for anaerobic activation of n-alkanes in the denitrifying bacterium, strain HxN1. Environ. Microbiol. 10(2):376-385 (2008). PubMed
Hünken, M., Harder J., Kirst G.O.: Epiphytic bacteria on the Antarctic ice diatom Amphiprora kufferathii Manguin cleave hydrogen peroxide produced during algal photosynthesis. Plant Biol. 10:519-526 (2008). PubMed
Kamp, A., Røy H., Schulz-Vogt H.N.: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microb. Ecol. 56:484-491 (2008). PubMed Full Text
Krüger, M., H. Wolters, M. Gehre, S.B. Joye and H.-H. Richnow: Tracing the slow growth of anaerobic methane-oxidizing communities by 15N-labelling techniques. FEMS Microbiol. Ecol. 63:401-411 (2008). PubMed
Kühn, S.F. and Köhler-Rink S.: pH effect on the susceptibility to parasitoid infection in the marine diatom Coscinodiscus spp. (Bacillariophyceae). Mar. Biol. 154:109-116 (2008). PubMed Full Text
Liebner, S., J. Harder and D. Wagner: Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. International Microbiology 11:195–202 (2008). PubMed Full Text
Mayr, S., C. Latkoczy, M. Krüger, D. Günther, S. Shima, R.K. Thauer, F. Widdel and B. Jaun: Structure of an F430 variant from Archaea associated with anaerobic oxidation of methane. J. Am. Chem. Soc. 130:10758–10767 (2008). PubMed
Musat, F., Galushko A., Jacob J., Widde, F., Kube M., Reinhardt R., Wilkes H., Schink B., Rabus R.: Anaerobic degradation of naphthalene and 2′methylnaphthalene by strains of marine sulfate-reducing bacteria. Environ. Microbiol. 11(1):209-219(2008). PubMed
Musat, F., Widdel F.: Anaerobic degradation of benzene by a marine sulfate-reducing enrichment culture, and cell hybridization of the dominant phylotype. Environ. Microbiol. 10(1):10-19 (2008). PubMed
Scheffel, A., Gärdes A., GrünbergK ., Wanner G. and D. Schüler: The major magnetosome proteins MamGFDC are not essential for magnetite biomineralization in Magnetospirillum gryphiswaldense but regulate the size of magnetosome crystals. Journal of Bacteriology 190(1):377-386 (2008). PubMed Full Text
Trautwein, K., Kühner S., Wöhlbrand L., Halder T., Kuchta K., Steinbüchel A., Rabus R.: Solvent stress response of the denitrifying bacterium "Aromatoleum aromaticum" strain EbN1. Appl. Environ. Microbiol. 74(8):2267-2274 (2008). PubMed Full Text
Widdel, F.: Erneuerbare Energieträger aus Mikroorganismen – Möglichkeiten und Grenzen. pp.138-169, Anmerkungen pp.319-323, In: Die Zukunft der Energie. Gruss, P., Schüth, F. (Hrsg.), C.H. Beck, München (2008).
Wöhlbrand, L., Rabus R.: Development of a Genetic System for the Denitrifying Bacterium 'Aromatoleum aromaticum' Strain EbN1. J. Mol. Microbiol. Biotechnol. doi: 10.1159/000159194 (2008). PubMed
Wöhlbrand, L., Wilkes H., Halder T., Rabus R.: Anaerobic degradation of p-Ethylphenol by "Aromatoleum aromaticum" strain EbN1: pathway, regulation, and involved proteins. J. Bacteriol. 190(16):5699-5709 (2008). PubMed Full Text
Diploma, M.Sc and B.Sc theses
Appel, Ansgar: Characterization of a new, glucose-fermenting marine Gammaproteobacterium. Master thesis, University of Osnabrück (2008).
Czisch, Maik: Characterization of marine bacteria from the pelagial of the North Atlantic (in German). Diploma thesis, University of Bremen (2008).
Dikfidan, Aytac: Establishment of a genetic system for Castellaniella defragrans Strain 65Phen (in German). Diploma thesis, Universität Bremen (2008).
Enning, Dennis: Anaerobic corrosion of iron by cultures of sulphate-reducing bacteria. Master thesis, MarMic, Universität Bremen, Bremen (2008).
Gottschall, Matthias: Optimization of the protein purification protocol for the isolation of linalool-dehydratase from the denitrifying bacterium Castellaniella defragrans strain 65Phen (in German). Diploma thesis, University of Applied Sciences, Jena (2008).
Holkenbrink, Carina: Taxonomische Charakterisierung von neuen Spezies des Genus Rhodopirellula. Bachelor thesis Universität Bremen, Bremen (2008).
Jaekel, Ulrike: Anaerobic oxidation of short-chain and cyclic alkanes by sulphate-reducing and denitrifying bacteria. Master thesis, MarMic, Universität Bremen, Bremen (2008).
Sommer, Daniel: Approaches to clone and over express two genes from the anaerobic monoterpene degradation pathway of Castellaniella defragrans 65Phen. Bachelor thesis, University of Applied Sciences, Bonn-Rhein-Sieg (2008).
Troppens, Danielle: Physiological characterization of newly isolated planctomycetes resembling Rhodopirellula baltica (in German). University of Applied Sciences, Berlin (2008).
Uffkes, Judith: Impact of increased carbon dioxide concentration on the structure of microbial communities in marine sediments. Diploma thesis, University of Bremen (2008).
Webner, Kirsten: Genexpression des anaeroben Alkanabbaus in dem denitrifizierenden Betaproteobakterium OcN1. Masterarbeit Universität Bremen, Bremen (2008).
Wiese, Maria: The fitness and formation of biofilm derived variants of Serratia marcescens. Diplomarbeit Universität Bremen, Bremen (2008).
Zaleska, Zane: Detection of nmsA transcripts in naphthalene- vs. 2-methylnaphthalene-grown cells of the sulphate-reducing strains NaphS2, NaphS3 and NaphS6. Master thesis, MarMic, Universität Bremen, Bremen (2008).
Ph.D theses
Hoa, Tran Nhu: New organic substrates for phototrophic bacteria. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 104pp.
Junge, Katja: Die Funktion der CDF-Transporter MamB und MamM beim magnetosomalen Eisentransport in Magnetospirillum gryphiswaldense. Dissertation Universität Bremen, Bremen (2008), 153pp.
Shovitri, Maya: Bacterial community in the intertidal sediments populated by Arenicola marina, a terminal restriction fragment length polymorphism study. Dissertation Universität Bremen, Bremen (2008), 135pp.
Wöhlbrand, Lars: Proteomische und genetische Untersuchungen zum Aromaten-Abbau in "Aromatoleum aromaticum" Stamm EbN1. Dissertation Universität Bremen, Bremen (2008), 213pp.

Diversity Group

Liebner, S., Harder, J. and Wagner, D.: Bacterial diversity and community structure in polygonal tundra soils from Samoylov Island, Lena Delta, Siberia. International Microbiology 11:195-202 (2008). PubMed Full Text
Hünken, M., Harder, J. and Kirst, G.O.: Epiphytic bacteria on antarctic ice diatom Amphiprora kufferathii Manguin cleave hydrogen peroxide produced during algal photosynthesis. Plant Biology 10:519-526 (2008). PubMed
Diploma, M.Sc and B.Sc theses
Appel, Ansgar: Charakterisierung eines neuartigen, auf Glucose gärenden, marinen Gammaproteobakteriums. Masterarbeit Biologie Universität Osnabrück, Osnabrück (2008), 66pp.
Czisch, Maik: Charakterisierung von marinen Bakterien aus dem Pelagial des Nordatlantiks. Diplomarbeit Biologie Universität Bremen, Bremen (2008), 110pp.
Dikfidan, Aytac: Etablierung eines genetischen Systems in Castellaniella defragrans Stamm 65Phen. Diplomarbeit Biologie Universität Bremen, Bremen (2008), 107pp.
Gottschall, Matthias: Optimierung des Proteinaufreinigungsprotokolls zur spezifischen Isolierung der Linalool-Dehydratase aus dem nitratreduzierenden Bakterium Castellaniella defragrans Stamm 65Phen. Diplomarbeit (Dipl.-Ing. (FH) Pharma-Biotechnologe) FH Jena, Jena (2008), 70pp.
Holkenbrink, Carina: Taxonomische Charakterisierung von neuen Spezies des Genus Rhodopirellula. Bachelorarbeit Biologie Universität Bremen, Bremen (2008), 52pp.
Sommer, Daniel: Approaches to clone and overexpress two genes from the anaerobic monoterpene degradation pathway of Castellaniella defragrans 65Phen. Bachelorarbeit, Fachhochschule Bonn-Rhein-Sieg (2008), 81pp.
Troppens, Danielle: Physiologische Untersuchungen zur Charakterisierung von Rhodopirellula baltica ähnlichen Planctomycetes-Neuisolaten. Diplomarbeit (Dipl.-Ing. (FH) Biotechnologie) Technische Fachhochschule Berlin, Berlin (2008), 71pp.

Ecophysiology Group

Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B.B. Jørgensen, A. Larson, J. Peckmann: Lipid biomarker patterns of phosphogenic sediments from upwelling regions. Geomicrobiology Journal 25:69-82 (2008). TFO
Kamp, A., Røy H. and Schulz-Vogt H. N.: Video-supported analysis of Beggiatoa filament growth, breakage, and movement. Microbial Ecology 56:484-491 (2008). PubMed Full Text

Department of Molecular Ecology

Amann, R. and B. Fuchs: Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Rev. Microbiol. 6:339-348 (2008). PubMed
Allers, E., C. Niesner C. Wild and J. Pernthaler: Microbes enriched in seawater after addition of coral mucus. Appl. Environ. Microbiol. 74(10):3274-3278 (2008). PubMed Full Text
Barberyon, T., F. Carpentier, S. L′Haridon, M. Schüler, G. Michel and R. Amann: Description of Maribacter forsetii sp. nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of the genus Maribacter. Int. J. System. Evol. Microbiol. 58:790-797 (2008). PubMed Full Text
Boetius, A., T. Holler, K. Knittel, J. Felden and F.Wenzhöfer: The seabed as natural laboratory: Lessons from uncultivated methanotrophs. pp. 59-82, In: Uncultivated Microorganisms. Microbiology Monographs, S. Epstein (ed.), Springer Verlag (2008). Springer
Gittel, A., M. Mußmann, H. Sass, H. Cypionka, and M. Konneke: Identity and abundance of active sulfate-reducing bacteria in deep tidal flat sediments determined by directed cultivation and CARD-FISH analysis. Environ. Microbiol. 10(10): 2645-2658 (2008). PubMed
Hieu, C. X., B. Voigt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker and T. Schweder: Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T . Proteomics 8:1608-1623 (2008). PubMed
Lösekann, T., A. Robador, H. Niemann, K. Knittel, A. Boetius, and N. Dubilier: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10:3237-3254 (2008). PubMed
Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillon, F. Horreard, R. Amann, B.B. Jørgensen and M.M.M. Kuypers: A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861-17866 (2008). PubMed Full Text
Payne, M.S., L. Høj, M. Wietz, M.R. Hall, L. Sly and D.G. Bourne: Microbial diversity of mid-stage Palinurid phyllosoma from Great Barrier Reef waters. Journal of Applied Microbiology 105:340-350 (2008). PubMed
Rossel, P.E., J.S. Lipp, H.F.Fredricks, J. Arnds, A. Boetius, M. Elvert, and K.-U. Hinrichs: Intact polar lipids of anaerobic methanotrophic archaea and associated bacteria. Org. Geochem. 39:992-999 (2008). ScienceDirect
Wegener, G., M. Shovitri, K. Knittel, H. Niemann, M. Hovland, and A. Boetius: Biogeochemical processes and microbial diversity of the Gullfaks and Tommeliten methane seeps (Northern North Sea). Biogeosciences 5:1127-1144 (2008). EBSCO
Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs and R. Amann: A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environ. Microbiol. 10(11):3106-3119 (2008). PubMed
Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K.-H. Schleifer, W. Ludwig, F. O. Glöckner, R. Rosselló-Mora: The all-species living tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. System. Appl. Microbiol. 31:241-250 (2008). PubMed
Zubkov, M.V., G.A. Tarran, I. Mary and B.M. Fuchs: Differential microbial uptake of dissolved amino acids and amino sugars in surface waters of the Atlantic Ocean. Journal of Plankton Research 30(2):211-220 (2008). JPR Full Text
Ph.D. theses
Liebner, Susanne: Adaption, Spatial Variability, and Phylogenetic Characterization of Methanotrophic Communities in Permafrost Soils of the Lena Delta, Siberia. PhD thesis, MarMic, Universität Bremen, Bremen (2008), 119pp.
Richter, Michael: Computational Processing and Biological Interpretation of Genomes and Metagenomes of Marine Bacteria. Dissertation Jacobs Universität Bremen, Bremen (2008), 162pp.

Symbiosis Group

Dubilier, N., Bergin C., Lott C.: Symbiotic diversity in marine animals: the art of harnessing chemosynthesis. Nature Reviews Microbiology 6:725-740 (2008). PubMed
Lösekann, T., Robador A., Niemann H., Knittel K., Boetius A., Dubilier N.: Endosymbioses between bacteria and deep-sea siboglinid tubeworms from an Arctic cold seep (Haakon Mosby Mud Volcano, Barents Sea). Environ. Microbiol. 10:3237-3254 (2008). PubMed
Ruehland, C., Blazejak A., Lott C., Loy A., Erséus C., Dubilier N.: Multiple bacterial symbionts in two species of co-occurring gutless oligochaete worms from Mediterranean sea grass sediments. Environ. Microbiol. 10(2):3404-3416 (2008). PubMed
Martí­nez-Garcí­a, M., Stief P., Dí­az-Valdés M., Wanner G., Ramos-Esplá A., Dubilier N., and Antón J.: Ammonia-oxidizing Crenarchaeota and nitrification inside the tissue of a colonial ascidian. Environ. Microbiol. 10(11):2991-3001 (2008). PubMed
M.Sc theses
Fink, Dennis: Distribution, abundance and productivity of endosymbionts in the deep-sea mussel Bathymodiolus. Master thesis/ PhD Thesis proposal, MarMic, University of Bremen, Bremen (2008), 55pp.
Röse, Karina: Symbiosis between bacteria and bathymodioline mussels at hydrothermal vent and cold seep sites. Master thesis/ PhD Thesis proposal, MarMic, University of Bremen, Bremen (2008), 76pp.
Ph.D. thesis
Zielinski, Frank: Geobiological coupling of hydrothermal vent fluids with endosymbiotic primary producers of Bathymodiolus mussels from hydrothermal vents on the Mid-Atlantic Ridge. Dissertation, MarMic, University of Bremen, Bremen (2008), 159pp.

Microbial Genomics Group

Amaral-Zettler, L., J. Peplies, A. Ramette, B. Fuchs, W. Ludwig and F. O. Glöckner: Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany. Syst. Appl. Microbiol. 31:258-268 (2008). PubMed
Bohnebeck, U., T. Lombardot, R. Kottmann and F. O. Glöckner: MetaMine - A tool to detect and analyse gene patterns in their environmental context. BMC Bioinformatics 9:459, 10pp. (2008). PubMed Full Text
Field, D., Garrity, G., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Ashburner, M., Boore, J.L., Cochrane, G., Cole, J., de Pamphilus, C., Edwards, R., Faruque, N., Feldman, R., Gray, T., Gurr, S., Haft, D., Hancock, D., Hertz-Fowler, C., Hughes, J., Joint, I., Kane, M., Kennedy, J., Kolker, E., Kyripides, N., Leebens-Mack, J., Lewis, S., Maltsev, N., Markowitz, V., Methe, B., Morrison, N., Nelson, K., Parkhill, J., Sansone, S., Spiers, A., Stevens, R., Swift, P., Taylor, C., Tateno, Y., Tett, T., Turner, S., Ussery, D., Vaughan, B., Whetzel, T., Wilson, G., Wipat, A.: Towards a richer description of our complete collection of genomes and metagenomes: the "Minimum Information about a Genome Sequence" (MIGS) specification. Lawrence Berkeley National Laboratory: Lawrence Berkeley National Laboratory. LBNL Paper LBNL-60477, Nat. Biotechnol. 26(5): 541-547 (2008). IIDI Full Text
Field, D., F. Oliver Glöckner, G.M. Garrity, T. Gray, P. Sterk, G.Cochrane, R. Vaughan, E. Kolker, R. Kottmann, N. Kyrpides, S. Angiuoli, P. Dawyndt, R.Guralnick, P. Goldstein, N. Hall, L. Hirschman, S. Kravitz, A. L. Lister, V. Markowitz, N. Thomson and T. Whetzel: Meeting report: The fourth Genomic Standards Consortium (GSC) workshop. Omics 12(2):101-108 (2008). PubMed Full Text
Field, D., G.M. Garrity, S.-A. Sansone, P. Sterk, T. Gray, N. Kyrpides, L. Hirschman, F. Oliver Glöckner, R. Kottmann, S. Angiuoli, O. White, P. Dawyndt, N. Thomson, I.S. Gil, N. Morrison, T. Tatusova, I. Mizrachi, R. Vaughan, G. Cochrane, L. Kagan, S. Murphy, L. Schriml and the Genomic Standards Consortium: Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. Omics 12(2):109-113 (2008). PubMed Full Text
Morrison N. , F.O.Glöckner, R. Kottmann, G. Cochrane, R. Vaughan, G. Garrity, J. Cole, L. Hirschman, L. Schriml, I. Mizrachi, S. Federhen, D. Schindel, S. Miller, P.Hebert, S. Ratnasingham, R. Hanner, L. Amaral-Zettler, M. Sogin, M. Ashburner, S. Lewis, B. Smith, Genomic Standards Consortium (GSC), International Nucleotide Sequence Database Collaboration (INSDC), Consortium for the Barcode of Life (CBOL), International Census of Marine Microbes (ICoMM) and the Environment Ontology Consortium (EnvO): Working together to put molecules on the map. Nature 453:978 (2008). Full Text
Field, D., Morrison N. , F.O. Glöckner, R. Kottmann, G. Cochrane, R. Vaughan, G. Garrity, J. Cole, L. Hirschman, L. Schriml, I. Mizrachi, S. Federhen, D. Schindel, S. Miller, P. Hebert, S. Ratnasingham, R. Hanner, L. Amaral-Zettler, M. Sogin, M. Ashburner, S. Lewis, B. Smith, Genomic Standards Consortium (GSC), International Nucleotide Sequence Database Collaboration (INSDC), Consortium for the Barcode of Life (CBOL), International Census of Marine Microbes (ICoMM) and the Environment Ontology Consortium (EnvO): Working together to put molecules on the map. Nature 453:978 (2008). PubMed
Garrity, G.M. , D. Field, N. Kyrpides, L. Hirschman, S.-A. Sansone, S. Angiuoli, J.R. Cole, F.O. Glöckner, E. Kolker, G. Kowalchuk, M.A. Moran, D. Ussery and O.White: Toward a standards-compliant genomic and metagenomic publication record. Omics 12(2):157-160 (2008). PubMed Full Text
Hieu, C. X., B. Voigt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker and T. Schweder: Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T . Proteomics 8:1608-1623 (2008). PubMed
Hirschman, L., C. Clark, K. B. Cohen, S. Mardis, J. Luciano, R. Kottmann, J. Cole, V. Markowitz, N. Kyrpides, N. Morrison, L. M. Schriml, D. Field and the Novo Project: Habitat-Lite: A GSC case study based on free text terms for environmental metadata. Omics-a Journal of Integrative Biology 12:129-136 (2008). PubMed Full Text
Kottmann, R., T. Gray, S. Murphy, L. Kagan, S. Kravitz, T. Lombardot, D. Field, F. O. Glöckner and the Genomic Standards Consortium: A standard MIGS/MIMS compliant XML schema: Toward the development of the Genomic Contextual Data Markup Language (GCDML). Omics 12(2):115-121 (2008). PubMed Full Text
Peplies, J., R. Kottmann, W. Ludwig and F. O. Glöckner: A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes. Syst Appl Microbiol 31:251-257 (2008). PubMed
Richter, M., T. Lombardot, I. Kostadinov, R. Kottmann, M. B. Duhaime, J. Peplies and F. O. Glöckner: JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta) genomes. BMC Bioinformatics 9:177, 9pp. (2008). PubMed Full Text
Van Brabant, B., T. Gray, B. Verslyppe, N. Kyrpides, K. Dietrich, F. O. Glöckner, J. Cole, R. Farris, L. M. Schriml, P. De Vos, B. De Baets, D. Field, P. Dawyndt: Laying the foundation for a genomic Rosetta stone: Creating information hubs through the use of consensus identifiers. Omics 12(2):123-127 (2008). PubMed Full Text
Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K. H. Schleifer, W. Ludwig, F. O. Glöckner and R. Rosselló-Mora.: The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst Appl Microbiol 31:241-250 (2008). PubMed
Diploma and M.Sc theses
Hankeln, Wolfgang: MetaBar – a tool for consistent contextual data acquisition for ecological genomics and metagenomics. MarMic, Master thesis, (2008).
í–ztürk, Basak: Metatranscriptomic analysis in the North Sea and the Baltic Sea. MarMic, Master thesis, (2008).
Waldmann, Jost: Phyloprint: Entwicklung und Anwendung eines Frameworks zur taxonomischen Klassifikation. Diplomarbeit (2008).

Nutrient Group


Duce, R.A., J. LaRoche, K. Altieri, K.R. Arrigo, A.R. Baker, D.G. Capone, S. Cornell, F. Dentener, J. Galloway, R.S. Ganeshram, R.J. Geider, T. Jickells, M.M.M. Kuypers, R. Langlois, P.S. Liss, S.M. Liu, J.J. Middelburg, C.M. Moore, S. Nickovic, A. Oschlies, T. Pedersen, J. Prospero, R. Schlitzer, S. Seitzinger, L.L. Sorensen, M. Uematsu, O. Ulloa, M. Voss, B. Ward, L. Zamora: Impacts of atmospheric anthropogenic nitrogen on the open ocean. Science 320:893-897 (2008). PubMed
Forster, A., M.M.M. Kuypers, S.C. Turgeon, H.-J. Brumsack, M.R. Petrizzo, J.S. S. Damsté: The Cenomanian/Turonian oceanic anoxic event in the South Atlantic: New insights from a geochemical study of DSDP Site 530A. Palaeogeography, Palaeoclimatology, Palaeoecology 267:256–283 (2008). ScienceDirect
Jensen, M.M., M.M.M. Kuypers, G. Lavik and B. Thamdrup: Rates and regulation of anaerobic ammonium oxidation and denitrification in the Black Sea. Limnology and Oceanography 53(1):23-36 (2008). ASLO Full Text
Lam P., J. P. Cowen, Popp, B. N. and Jones, R. D.: Microbial Ammonia Oxidation and Enhanced Nitrogen Cycling in the Endeavour Hydrothermal Plume. Geochimica et Cosmochimica Acta 72(9): 2268-2286 (2008). ScienceDirect
Lavik, G., T. Stührmann, V. Brüchert, A. Van der Plas, V. Mohrholz, P. Lam, M. Mußmann, B.M. Fuchs, R. Amann, U. Lass and M.M.M. Kuypers: Detoxification of sulphidic African shelf waters by blooming chemolithotrophs. Nature 457:581-585 (2008). PubMed
Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B.B. Jørgensen and M.M.M. Kuypers: A single cell view on the ecophysiology of anaerobic phototrophic bacteria. PNAS 105(46):17861–17866 (2008). PubMed Full Text
Schmid, M.C., A.B. Hooper, M.G. Klotz, D. Woebken, P. Lam, M.M.M. Kuypers, A. Pommerening-Roeser, H.J.M. op den Camp, M.S.M. Jetten: Environmental detection of the octaheme cyctochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria. Environmental Microbiology 10(11):3140–3149 (2008). PubMed
Schwermer, C. U., Lavik G., Abed R. M. M., Dunsmore B., Ferdelman T.G., Stoodley P., Gieseke A., de Beer D.: Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields. Applied and Environmental Microbiology 74(9):2841-2851 (2008). PubMed Full Text
Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs and R. Amann: A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones. Environmental Microbiology 10:3106–3119 (2008). PubMed
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