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11.05.2016 Bacterial Individualism: A Survival Strategy for Hard Times

May 11, 2016
No two bacteria are identical – even when they are genetically the same. A new study reveals the conditions under which bacteria become individualists and how they help their group grow when times get tough.


Whether you are a human or a bacterium, your environment determines how you can develop. In particular, there are two fundamental problems. First: what resources can you draw on to survive and grow? And second: how do you respond if your environment suddenly changes?
A group of researchers from Eawag, ETH Zurich, EPFL Lausanne, and the Max Planck Institute for Marine Microbiology in Bremen recently discovered that the number of individualists in a bacterial population goes up when its food source is restricted. Their finding goes against the prevailing wisdom that bacterial populations merely respond, in hindsight, to the environmental conditions they experience. Individualists, the study finds, are able to prepare themselves for such changes well in advance.
Frank Schreiber
Die Bakterien-kulturen von K. oxy­to­ca wurden in sogenannten Chemostaten (kontinuierlichen Kulturen) mit verschiedenen Konzentrationen von Ammonium und einem Überschuss an elementarem, gasförmigem Stickstoff (N2) versorgt.

Scarcity fosters diversity, diversity promotes flexibility

In a recent paper in the journal Nature Microbiology, researchers working with Frank Schreiber have shown that individual cells in bacterial populations can differ widely in how they respond to a lack of nutrients. Although all of the cells in a group are genetically identical, the way they process nutrients from their surroundings can vary from one cell to another. For example, bacteria called Klebsiella oxytoca preferentially take up nitrogen from ammonium (NH4+), as this requires relatively little energy. When there isn’t enough ammonium for the entire population, some of the bacteria start to take up nitrogen by fixing it from elementary nitrogen (N2), even though this requires more energy. If the ammonium suddenly runs out altogether, these cells at least are prepared. While some cells suffer, the group as a whole can continue to grow. “Although all of the bacteria in the group are genetically identical and exposed to the same environmental conditions, the individual cells differ among themselves,” says Schreiber.

Detailed insights thanks to the latest technology

Schreiber and his colleagues were only able to reveal the astonishing differences between the bacteria by studying them very closely. “We had to measure nutrient uptake by individual bacterial cells – even though these are only 2 μm large,” explains Schreiber. “Usually, microbiologists study the collective properties of millions or even billions of bacteria. It was only thanks to the close collaboration between the research groups, and by pooling our expertise and technical equipment, that we were able to study the bacteria in such detail.”


EPFL, Alain Herzog
Das NanoSIMS an der EPFL Lausanne und am Center for Advanced Surface Analysis der Universität Lausanne. Zu sehen sind (von links) die Mitautoren Stéphane Escrig und Anders Meibom sowie Florent Plane.


Bacteria are individualists, too

The present study shows to what extent individuality – in bacteria and in general – can be essential in a changing environment. Differences between individuals give the group new properties, enabling it to deal with tough environmental conditions. “This indicates that biological diversity does not only matter in terms of the diversity of plant and animal species but also at the level of individuals within a species,” says Schreiber.
Next, Schreiber and his colleagues plan to study whether the individualistic behavior of specific individuals is of equal importance in natural environments.
Max-Planck-Institut für Marine Mikrobiologie, M. Schlösser
Technikerin Daniela Tienken und Mitautor Sten Littmann am NanoSIMS (Nanometer-scale Secondary Ion Mass Spectrometer) am Max-Planck-Institut für Marine Mikrobiologie. Das NanoSIMS ist eines der Großgeräte, die die vorliegende Untersuchung möglich machten. Dieses Gerät erlaubt, die Stickstoffixierung einzelner Zellen in einer Bakterienkultur zu messen.
Frank Schreiber
Einzelne Zellen von K. oxytoca. Das Bild wurde mit einem NanoSIMS aufgenommen und zeigt die Anreicherung der Zellen mit schwerem Stickstoff (15N), nachdem diese mit schwerem elementarem Stickstoff (15N2) gefüttert wurden. Die unterschiedliche Färbung zeigt, dass die genetisch gleichen Zellen einer Population unterschiedlich viel elementaren Stickstoff in die Zellmasse einbauen (je wärmer die Färbung, desto mehr elementarer Stickstoff wurde eingebaut).

Original publication

Phenotypic heterogeneity driven by nutrient limitation promotes
growth in fluctuating environments
Frank Schreiber, Sten Littmann, Gaute Lavik, Stéphane Escrig, Anders Meibom, Marcel Kuypers, Martin Ackermann. Nature Microbiology. DOI : http://doi.org10.1038/NMICROBIOL.2016.55

For further inquiries

Frank Schreiber / +49 30 8104-1414/ [Bitte aktivieren Sie Javascript]
Marcel Kuypers / +49 421 2028 602 / [Bitte aktivieren Sie Javascript]
Martin Ackermann / +41 58 765 5122 / [Bitte aktivieren Sie Javascript]

or the press service

Dr. Manfred Schlösser / +49 421 2028 704 / [Bitte aktivieren Sie Javascript]
Dr. Fanni Aspetsberger / +49 421 2028 947 / [Bitte aktivieren Sie Javascript]
Andri Bryner / +41 58 765 51 04 / [Bitte aktivieren Sie Javascript]

Participating institutes

Max Planck Institute for Marine Microbiology, Bremen, Germany
École polytechnique fédérale de Lausanne EPFL, Lausanne, Switzerland
ETH Zurich, Switzerland
Eawag, Dübendorf and Kastanienbaum, Switzerland
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