Publications (selected list)

2015Anna L. Dörgens, Soeren Ahmerkamp, Jörg Müssig, Roman Stocker, Marcel M. M. Kuypers, Arzhang Khalil, and Kolja Kindler: A laboratory model of marine snow: Preparation and characterization of porous fiber particles.
Danny Ionescu, Mina Bizic-Ionescu, Arzhang Khalili, Reza Malekmohammadi, Mohammad Reza Morad, Dirk de Beer & Hans-Peter Grossart:
A new tool for long-term studies of POM-bacteria interactions: overcoming the century-old Bottle Effect. Scientific Reports 5, Article number: 14706 (2015)
2014Khalili, A., Morad, M., Matyka, M., Liu, B., Malekmohammadi, R., Weise, J., Kuypers, M. M. M. (2014). Porosity variation below a fluid–porous interface. Chemical Engineering Science. 107: 311-316.
2013Contreras, S., Meister, P., Liu, B., Prieto-Mollar, X., Hinrichs, K. U., Khalili, A., Ferdelman, T., Kuypers, M. M. M., Jørgensen, B. B. (2013). Cyclic 100-
ka (glacial-interglacial) migration of subseafloor redox zonation on the
Peruvian shelf. Proc Natl Acad Sci U S A. 110(45): 18098-103.
Meister, P., Liu, B., Ferdelman, T. G., Jørgensen, B. B., Khalili, A. (2013). Control of sulphate and methane distributions in marine sediments by organic matter reactivity. Geochimica et Cosmochimica Acta. 104: 183-193.
2012Liu, B. , K. Kindler, A. Khalili. (2012). Dynamic solute release from marine aggregates. Limnology and Oceanography: Fluids and Environments, 2.doi:10.1215/21573689-2016772
Lettmann, K. A., Riedinger, N., Ramlau, R., Knab, N., Böttcher, M., Khalili, A., Wolff, J., Jørgensen, B.B. (2012). Estimation of biogeochemical rates from concentration profiles: A novel inverse method. Estuarine, Coastal and Shelf Science. 100: 26-37.
Gao, H., Matyka, M., Liu, B., Khalili, A., Kostka, J.E., Collins, G., Jansen, S., Holtappels, M., Jensen, M.M., Badewien, T. H., Beck, M., Grunwald, M., de Beer, D., Lavik, G., Kuypers, M.M.M. (2012). Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea. Limnology & Oceanography: Fluids and environments., 57(1): 185-198.
2010Khalili,A., Liu, Javadi, K.B. Morad, M. R., Matyka, M., Kindler, K., Stocker, R. and Koza, Z. (in press). Application of porous media theories in marine biological modeling. In: Porous Media: Applications in Biological Systems and Biotechnology Ed. K. Vafai,Taylor & Francis.
Roskosch, A., Morad, M. R., Khalili, A., and Lewandowski, J. (2010). Bioirrigation by Chironomus plumosus: advective flow investigated by particle image velocimetry. Journal of the North American Benthological Society. 29(3): 789-802.
Morad, M.R., Khalili, A., Roskosch A., and Lewandowski J. (2010). Quantification of pumping rate of Chironomus Plumosus larvae in natural burrows. Aquatic Ecology. 44 (1): 143-153.
Kindler, K., Khalili, A., Stocker, R. (2010). Diffusion-limited retention of porous particles at density interfaces. Proc Natl Acad Sci U S A. 107(51):22163-8.
2009Javadi, K., and Khalili, A. (2009). On generating uniform bottom shear stress. Part II: shear stress inducing devices. Recent Patents on Chemical Engineering, 2(3): 223-229.
Roskosch, A., Jordan, S., Hette, N., Buchert, R., Khalili, A., Morad, M. R., Nützmann, G., Hupfer, M., and Lewandowski, J. (2009). Die Wirkung von Chironomus plumosus (Diptera: Chironomidiae) auf Transportprozesse in limnischen Systemen. - Deutsche Gesellschaft für Limnologie (DGL) - Erweiterte Zusammenfassungen der Jahrestagung 2008 (Konstanz): 449-454.
Koza, Z., Matyka, M., and Khalili, A. (2009). Finite-size anisotropy in statistically uniform porous media. Physical Review E. 79: 066306-1-- 066306-7.
Liu, B. and Khalili, A. (2009). Lattice Boltzmann model for exterior flows with an annealing preconditioning method. Physical Review E. 79: 066701-1-- 066701-7.
Stöhr, M., Schanze, J. and Khalili, A. (2009).Visualization of gas-liquid mass transfer and wake structure of rising bubbles using pH-sensitive PLIF. Experiments in Fluids, 47:135–143.
Morad, M.R. and Khalili, A. (2009). Transition layer thickness in a fluid-porous medium of multi-sized spherical beads. Experiments in Fluids, 46 (2): 323-330.
2008Alam, M. and Khalili, A. (2008). Instabilities and patterns in horizontally oscillating particulate suspension. Physical Review E, 77:041305-1--041305-1.
Matyka, M., Khalili, A. and Koza, Z. (2008). Tortuosity-porosity relation in porous media flow. Physical Review E, 78: 026306-1--026306-8.
Liu, B. and Khalili, A. (2008). Acceleration of steady-state lattice Boltzmann simulations for exterior flows. Physical Review E, 78: 056701-1--056701-9.
Khalili, A., Javadi, K., Saidi, A., Goharzadeh, A., Huettel, M. and Jørgensen, B.B. (2008). On Generating Uniform Bottom Shear Stress, Part I: A Quantitative Study of Microcosm Chambers. Recent Patents on Chemical Engineering, 1(3): 174-191.
2007Bera, P. and Khalili, A. (2007). Stability of buoyancy opposed mixed convection in a vertical channel and its dependence on permeability. Adv. Water Res.30(11), 2296-2308.
2006Bera, P. and Khalili, A. (2006). Influence of Prandtl number on the stability of mixed convective flow in a vertical channel filled with a porous medium. Phys. Fluids, 18. 124103-1 - 124103-10.
Bhattacharyya, S., Dhinakaran, S. and Khalili, A. (2006). Fluid motion around and through a porous cylinder.Chem. Eng. Sci. 61, 4451-4461.
Stoehr, M. and Khalili, A. (2006). Dynamic regimes of buoyancy-affected two-phase flow in unconsolidated porous media. Phys. Rev. E, 73, 036301-1 -- 036301-8
2005Goharzadeh, A., Khalili, A. and Jørgensen, B. B. (2005). Transition layer thickness at a fluid-porous interface. Phys. Fluids, 17. 057102-1 - 057102-10.
Khalili, A. (2005). Modelling seawater-pore water exchange near seabeds. In Oil pollution and its environmental impact in the Arabic Gulf region. M. Al-Azhab, W. E-Shorbagy and S. Al-Ghais (eds) 147-156. Elsevier
Goharzadeh, A., Saidi, A., Wang, D., Merzkirch, W. and Khalili, A. (2005). An experimental investigation of the Brinkman layer thickness at a fluid-porous interface. In One Hundred Years Boundary Layer Research. G. E. A. Meier and K. R. Sreenivasan (eds) . 445-454, Springer Verlag.
2003Khalili, A. and Shivakumara, I. S. (2003).Non-Darcian effects on the onset of convection in a porous layer with throughflow.Transport in Porous Media, 53, 245-263.
Forster, S., Khalili, A. and Kitlara, J. (2003).Variation of non-local irrigation in a subtidal benthic community. J. Mar. Res.61, 335-357.
Khalili, A., Shivakumara, I. S. and Suma, S. P. (2003). Convective instability in superposed fluid and porous layers with throughflow. Transport in Porous Media, 51, 1-18.
2002Khalili, A., Shivakumara, I. S. and Huettel, M. (2002). Effects of throughflow and internal heat generation on convective instabilities in an anisotropic porous layer. J. Porous Media, 5, 187-198.
Bera, P. and Khalili, A. (2002). Stability of mixed convection in an anisotropic vertical porous channel. Phys. Fluids, 14, 1617-1630.
Bera, P. and Khalili, A. (2002). Double-diffusive natural convection in an anisotropic porous cavity with opposing buoyancy forces: multi-solutions and oscillations. Int. J. Heat Mass, 45, 3205-3222.
2001Khalili, A., Huettel, M. and Merzkirch, W. (2001). Techniques for fine-scale boundary layer measurements. In `The benthic boundary layer: transport processes and biogeochemistry', B. P. Boudreau and B. B. Jørgensen (eds.), Oxford University Press.
2000Chakraborty, B. B., Khattar, D. and Khalili, A. (2000). Effect of rotation on stability of suspended sediments. Phys. Fluids, 12, 3074-3077.
1999Khalili, A., Basu, A. J., Pietrzyk, U. and Raffel, M. (1999). An experimental study of recirculating flow through fluid-sediment interfaces. J. Fluid Mech., 383, 229-247.
Pringault O, Epping E, Guyoneaud R, Khalili A, and Kuhl, M. (1999). Dynamics of anoxygenic photosynthesis in an experimental green sulphur bacteria biofilm. Environ. Microbiol., 1, 295-305.
Epping, E., Khalili, A. and Thar, R. (1999). Photosynthesis and the dynamics of oxygen consumption in a microbial mat as calculated from transient oxygen microprofiles. Limnol. Oceanogr., 44, 1936-1948.
Khalili and A. J. Basu and U. Pietrzyk and Jørgensen, B. B. (1999). Advective transport through permeable sediments: a new numerical and experimental approach. Acta Mechanica, 132, 221-227.
Basu, A. J. and Khalili, A. (1999). Computation of flow through fluid-sediment interfaces in a benthic chamber. Phys. Fluids, 12, 3074-3077.
1998Khalili, A. and Shivakumara, I. S. (1998). Onset of convection in a porous layer with net through-flow and internal heat generation. Phys. Fluids,10, 315-317.
Khalili, A., Basu, A. J. and Pietrzyk, U. (1998). Flow visualization in porous media via positron emission tomography. Phys. Fluids, 10, 1031-1033.
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