Publications

Prof. Dr. Bo Barker Jørgensen

MPI for Marine Microbiology
Celsiusstr. 1
D-28359 Bremen
Germany

Phone: 

+4587 15656 3

Fax:

+4587 15432 6

 2020

Scholze, C., B. B. Jørgensen, H. Røy. Psychrophilic properties of sulfate reducing bacteria in Arctic sediments. Limnology and Oceanography, in press.

 

Jørgensen, B. B., K. Laufer, A. Michaud, L. Wehrmann. Biogeochemistry and microbiology of high Arctic marine sediment ecosystems – case study Svalbard fjords. Limnology and Oceanography, in press. 

doi:10.1002/lno.11551

 

Deng, L., D. Bölsterli, E. Kristensen, C. Meile, C.-C. Su, S. M. Bernasconi, M.-S. Seidenkrantz, C. Glombitza, L. Lagostina, X. Han, B. B. Jørgensen, H. Røy, M. A. Lever (2020) Differential impacts of macrofaunal ventilation and reworking on microbial community structure in marine surface sediment. Proceedings of the National Academy of Sciences, USA, 117: 15911-15922. 

doi:10.1073/pnas.1917494117

 

Liu, J., A. Pellerin, G. Antler, S. Kasten, A. Findlay, I. Dohrmann, H. Røy, A. V. Turchyn, B. B. Jørgensen (2020) Early diagenesis of iron and sulfur in Bornholm Basin sediments: the role of near-surface pyrite formation. Geochimica et Cosmochimica Acta, 284: 43-60.

doi:10.1016/j.gca.2020.06.03.

 

Michaud, A. B., K. Laufer, A. J. Findlay, A. Pellerin, G. Antler, A. V. Turchyn, H. Røy, B. B. Jørgensen (2020) Connecting the iron and sulfur cycles in glacially influenced Arctic fjords. Geochimica et Cosmochimica Acta, 280: 423-440.

doi:10.1016/j.gca.2019.12.033.

 

Pellerin, A., G. Antler, A. Marietou, A. V. Turchyn, B. B. Jørgensen (2020) The effect of temperature on sulfur and oxygen isotope fractionation by sulfate reducing bacteria (Desulfococcus multivorans). FEMS Microbiology Letters, 367, fnaa061.

doi:10.1093/femsle/fnaa061. (Editors choice).

 

Findlay, A. J., A. Pellerin, K. Laufer, B. B. Jørgensen (2020) Quantification of sulphide oxidation rates in sediment. Geochimica et Cosmochimica Acta, 280: 441-452.

doi:10.1016/j.gca.2020.04.007.

 

Marietou, A., M. B. Lund, I. P. G. Marshall, L. Schreiber, B. B. Jørgensen (2020) Complete genome sequence of Desulfobacter hydrogenophilus AcRS1. Marine Genomics, 50: 100691. 

doi:10.1016/j.margen.2019.05.006.

 

Liu, J., A. Pellerin, G. Izon, J. Wang, G. Antler, J. Liang, P. Su, B. B. Jørgensen, S. Ono (2020) The multiple sulphur isotope fingerprint of a sub-seafloor oxidative sulphur cycle driven by iron. Earth and Planetary Science Letters, 536: 116165.

doi:10.1016/j.epsl.2020.116165.

 

Lueder, U., M. Maisch, K. Laufer, B. B. Jørgensen, A. Kappler C. Schmidt (2020) Influence of physical perturbation on Fe(II) supply in coastal marine sediments. Environmental Science and Technology, 54: 3209-3218.

doi:10.1021/acs.est.9b06278.

 

Jørgensen, B. B., T. Andrén, I. P. G. Marshall (2020) Sub-seafloor biogeochemical processes and microbial life in the Baltic Sea. Environmental Microbiology, 22: 1688-1706.

doi:10.1111/1462-2920.14920.

 

Lueder, U., B. B. Jørgensen, A. Kappler, C. Schmidt (2020) Photochemistry of iron in aquatic environments. Environmental Science: Processes & Impacts, 22: 12-23.

doi:10.1039/c9em00415g.

 

Lueder, U., B. B. Jørgensen, A. Kappler, C. Schmidt (2020) Fe(III) photoreduction producing Fe2+aq in oxic freshwater sediment. Environmental Science and Technology, 54: 862-869.

doi:10.1021/acs.est.9b05682.

 

Herbert, L. C., N. Riedinger, A. B. Michaud, K. Laufer, H. Røy, B. B. Jørgensen, C. Heilbrun, R. C. Aller, J. K. Cochran, L. M. Wehrmann (2020) Glacial controls on redox-sensitive trace element cycling in Arctic fjord sediments (Spitsbergen, Svalbard). Geochimica et Cosmochimica Acta, 271: 33-60.

doi:10.1016/j.gca.2019.12.005.

2019

Laufer, K., A. B. Michaud, H. Røy, B. B. Jørgensen (2019) Reactivity of iron minerals in the seabed toward microbial reduction – a comparison of different extraction techniques. Geomicrobiology Journal, 37: 170-189.

doi:10.1080/01490451.2019.1679291.

 

Meister, P., B. Liu, A. Khalili, M. E. Böttcher, B. B. Jørgensen (2019) Factors controlling the carbon isotope composition of dissolved inorganic carbon and methane in marine porewater: An evaluation by reactive-transport modelling. Journal of Marine Systems, 200: 103227.

doi:10.1016/j.jmarsys.2019.103227.

 

Jørgensen, B. B (2019) Unravelling the sulfur cycle of marine sediments. Environmental Microbiology, 21. 

doi:10.1111/1462-2920.14721

 

Buongiorno, J., A. Szynkiewicz, A. Faiia, L. Herbert, L. Wehrmann, A. Michaud, K. Laufer, H. Røy, B. B. Jørgensen, K. Yeager, K. Schindler, K. G. Lloyd. Biological catalysis of a complete iron and sulfur cycle in Arctic marine fjord sediments, Van Keulenfjorden, Svalbard. Applied and Environmental Microbiology, 85: UNSP e00949-19. 

doi:10.1128/AEM.00949-19

 

Eickenbusch, P., K. Takai, O. Sissman, S. Suzuki, C. Menzies, S. Sakai, P. Sansjofre, E. Tasumi, S. M. Bernasconi, C. Glombitza, B. B. Jørgensen, Y. Morono, M. A. Lever (2019) Origin of short-chain organic acids in serpentinite mud volcanoes of the Mariana Convergent Margin. Frontiers in Microbiology, 10: 1729. 

doi: 10.3389/fmicb.2019.01729.

 

Pellerin, A., G. Antler, S. A. Holm, A. J. Findlay, P. W. Crockford, A. V. Turchyn, B. B. Jørgensen, K. Finster (2019) Large sulfur isotope fractionation by bacterial sulfide oxidation. Science Advances, 5: eeaw1480. 

doi: 10.1126/sciadv.aaw1480.

 

Cai, L., B. B. Jørgensen, C. A. Suttle, M. He, B. A. Cragg, N. Jiao, R. Zhang (2019) Active and diverse viruses persist in deep sub-seafloor sediments over thousands of years. The ISME Journal, 13: 1857-1864.

doi: 10.1038/s41396-019-0397-9.

 

Mhatre, S. S., S. Kaufmann, I. P. G. Marshall, S. Obrochta, T. Andrén, B. B. Jørgensen, B. Aa. Lomstein (2019) Microbial biomass turnover times and clues to cellular protein repair in energy-limited deep Baltic Sea sediments. FEMS Microbiology Ecology, 95: fiz068. 

doi: 10.1093/femsec/fiz068.

 

Glombitza, C., M. Egger, H. Røy, B. B. Jørgensen (2019) Controls on volatile fatty acid concentrations in marine sediments (Baltic Sea). Geochimica et Cosmochimica Acta, 258: 226-241.

doi: 10.1016/j.gca.2019.05.038.

 

Marshall, I. P G., G. Ren, M. Jaussi, B. A. Lomstein, B. B. Jørgensen, H. Røy, K. U. Kjeldsen. Environmental filtering determines family-level structure of sulfate-reducing microbial communities in subsurface marine sediments. The ISME Journal, 13: 1920-1932. 

doi:10.1038/s41396-019-0387-y

 

Cramm, M. A., A. Chakraborty, C. Li, S. E. Ruff, B. B. Jørgensen, C. R. J. Hubert (2019) Freezing tolerance of thermophilic endospores in permanently cold marine sediment. Frontiers in Microbiology, 10: 945. 

doi: 10.3389/fmicb.2019.00945.

   

Jørgensen, B. B., F. Beulig, M. Egger, C. Petro, C. Scholze, H. Røy (2019) Organoclastic sulfate reduction in the sulfate-methane transition of marine sediments. Geochimica et Cosmochimica Acta, 254: 231-245.

doi.org/10.1016/j.gca.2019.03.016.

 

Jørgensen, B. B., A. J. L. Findlay, A. Pellerin. The biogeochemical sulfur cycle of marine sediments. Frontiers in Microbiology, 10: 849. 

doi: 10.3389/fmicb.2019.00849.

 

Petro, C., B. Zäncker, P. Starnawski, L. M. Jochum, T. G. Ferdelman, B. B. Jørgensen, H. Røy, K. U. Kjeldsen, A. Schramm. Marine deep biosphere microbial communities assemble in near-surface sediments. Frontiers in Microbiology, 10: 758. 

doi: 10.3389/fmicb.2019.00758.

 

Dale, A. W., S. Flury, H. Fossing, P. Regnier, H. Røy, C. Scholz, B. B. Jørgensen (2019) Kinetics of organic carbon mineralization and methane formation in marine sediments (Aarhus Bay, Denmark). Geochimica et Cosmochimica Acta, 252: 159-178.

doi.org/10.1016/j.gca.2019.02.033.

 

Zinke, L. A., C. Glombitza, J. T. Bird, H. Røy, B. B. Jørgensen, K. G. Lloyd, B. K. Reese (2019). Microbial organic matter degradation potential in Baltic Sea sediments influenced by depositional conditions and in situ geochemistry. Applied and Environmental Microbiology, 85, e02164-18.

doi: 10.1128/AEM.02164-18.

 

Hanson, C. A., A. L. Müller, A. Loy, C. Dona, R. Appel, B. B. Jørgensen, C. R. J. Hubert (2019) Historical factors associated with past environments influence the biogeography of thermophilic endospores in Arctic marine sediments. Frontiers in Microbiology, 10: 245.

doi:10.3389/fmicb.2019.00245.

 

Meister, P., B. Brunner, A. Picard, M. E. Böttcher, B. B. Jørgensen (2019) Carbon and Sulphur isotopes as tracers of past sub-seafloor microbial activity. Scientific Reports, 9: 604.

doi: 10.1038/s41598-018-36943-7.

 

Beulig, F., H. Røy, S. E. McGlynn, B. B. Jørgensen (2019) Cryptic CH4 cycling in the sulfate-methane transition of marine sediments apparently mediated by ANME-1 archaea. The ISME Journal, 13: 250-262.

doi:10.1038/s41396-018-0273-z.

2018

Torti, A., B. B. Jørgensen, M. A. Lever (2018) Preservation of microbial DNA in marine sediments: insights from extracellular DNA pools. Environmental Microbiology, 20: 4526-4542.

doi: 10.1111/1462-2920.14401.

 

Müller, A. L., C. Pelikan, J. R. de Rezende, K. Wasmund, M. Putz, C. Glombitza, K. U. Kjeldsen, B. B. Jørgensen, A. Loy (2018) Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment. Environmental Microbiology, 20: 2927-2940. 

doi:10.1111/1462-2920.14297

 

Jochum, L. M., L. Schreiber, I. P. G. Marshall, B. B. Jørgensen, A. Schramm, K. U. Kjeldsen (2018) Single-cell genomics reveals a diverse metabolic potential of uncultivated Desulfatiglans-related Deltaproteobacteria widely distributed in marine sediment. Frontiers in Microbiology, 9: 2038.

doi:10.3389/fmicb.2018.02038

 

Hilligsøe, K. M., J. B. Jensen, T. G. Ferdelman, H. Fossing, L. Lapham, H. Røy, B. B. Jørgensen (2018) Methane fluxes in marine sediments quantified through core analysis and seismo-acoustic mapping (Bornholm Basin, Baltic Sea). Geochimica et Cosmochimica Acta, 239: 255-274.

doi.org/10.1016/j.gca.2018.07.040

 

Pellerin, A., G. Antler, H. Røy, A. Findlay, F. Beulig, C. Scholze, A. V. Turchyn, B. B. Jørgensen (2018) The sulfur cycle below the sulfate-methane transition of marine sediments. Geochimica et Cosmochimica Acta, 239: 74-89.

doi.org/10.1016/j.gca.2018.07.027

 

Egger, M., N. Riedinger, J. M. Mogollon, B. B. Jørgensen (2018) Global diffusive fluxes of methane in marine sediments. Nature Geoscience, 11: 421-425.

doi.org/10.1038/s41561-018-0122-8

 

Xiao, K.-Q., F. Beulig, H. Røy, B. B. Jørgensen, N. Risgaard-Petersen (2018) Methylotrophic methanogenesis fuels cryptic methane cycling in marine surface sediment. Limnology and Oceanography,

doi:10.1002/lno.10788

 

Marietou, A., H. Røy, B. B. Jørgensen, K. U. Kjeldsen (2018) Sulfate transporters in sulfate reducing microbes: a comparative genomics analysis. Frontiers in Microbiology, 9: #309.

doi:10.3389/fmicb.2018.00309

 

Beulig, F., H. Røy, C. Glombitza, B. B. Jørgensen (2018) Control on rate and pathway of anaerobic organic carbon degradation in the seabed. Proceedings of the National Academy of Science (USA), 115: 367-372.

www.pnas.org/cgi/doi/10.1073/pnas.1715789115

 

Marshall, I. P. G., S. M. Karst, P. H. Nielsen, B. B. Jørgensen (2018) Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition.  Marine Genomics, 37: 58-68.

http://dx.doi.org/10.1016/j.margen.2017.08.004

 

Jochum, L., X. Chen, M. A. Lever, A. Loy, L. Schreiber, B. B. Jørgensen, A. Schramm, K. U. Kjeldsen (2017) Depth distribution and assembly of sulfate-reducing microbial communities in marine sediment. Applied and Environmental Microbiology, 83: e01547-17.

doi.org/10.1128/AEM.01547-17

 

Evans, T. W., L. Wörmer, M. A. Lever, J. S. Lipp, L. Lagostina, Y.-S. Lin, B. B. Jørgensen, K.-U. Hinrichs (2017) Size and composition of subseafloor microbial community in the Benguela upwelling area examined from intact membrane lipid and DNA analysis. Organic Geochemistry, 111: 86-100.

doi.org/10.1016/j.orggeochem.2017.06.008

 

Zinke, L. A., M. M. Mullis, J. T. Bird, I. P. G. Marshall, B. B. Jørgensen, K. G. Lloyd, J. P. Amend, B. K. Reese (2017) Thriving or surviving? Evaluating active microbial guilds in Baltic Sea sediment. Environmental Microbiology Reports, 9: 528-536.

doi:10.1111/1758-2229.12578

 

Jørgensen, B. B. (2017) Microbial life in deep subseafloor coal beds. Proceedings National Academy of Science (USA), 114: 11568-11570.

Doi: www.pnas.org/cgi/doi/10.1073/pnas.1716232114.

 

Wehrmann, L. M., N. Riedinger, B. Brunner, A. Kamyshny, C. Hubert, L. Herbert, V. Brüchert, B. B. Jørgensen, T. G. Ferdelman, M. J. Formolo (2017) Iron-controlled oxidative sulfur cycling recorded in the distribution and isotopic composition of sulfur species in glacially influenced fjord sediments of west Svalbard. Chemical Geology, 466: 678-695.

doi.org/10.1016/j.chemgeo.2017.06.013

2017

BRAUN, S., S. S. MHATRE, M. JAUSSI, H. RØY, K. U. KJELDSEN, C. PEARCE, M.-S. SEIDENKRANTZ, B. B. JØRGENSEN & B. Aa. LOMSTEIN (2017) Microbial turnover times in the deep seabed studied by amino acid racemization modelling. Nature Scientific Reports, 7:

doi:10.1038/s41598-017-05972-z

 

XIAO, K.-Q., F. BEULIG, K. U. KJELDSEN, B. B. JØRGENSEN & N. RISGAARD-PETERSEN (2017) Concurrent methane production and oxidation in surface sediment from Aarhus Bay, Denmark. Frontiers in Microbiology, 8: 1198.

doi: 10.3389/fmicb.2017.01198

 

CHEN, X. H., T. J. ANDERSEN, Y. MORONO, F. INAGAKI, B. B. JØRGENSEN & M. A. LEVER (2017) Bioturbation as a key driver behind the dominance of Bacteria over Archaea in near-surface sediment. Nature Scientific Reports, 7: 2400.

doi:10.1038/s41598-017-02295-x

 

EGGER, M., M. HAGENS, C. J. SAPART, N. DIJKSTRA, N. A. G. M. VAN HELMOND, J. M. MOGOLLÓN, N. RISGAARD-PETERSEN, C. VAN DER VEEN, S. KASTEN, N. RIEDINGER, M. BÖTTCHER, T. RÖCKMANN, B. B. JØRGENSEN & C. P. SLOMP (2017) Iron oxide reduction in deep Baltic Sea sediments: the potential role of anaerobic oxidation of methane. Geochimica et Cosmochimica Acta, 207: 256-276

doi: 10.1016/j.gca.2017.03.019

 

STARNAWSKI, P., T. BATAILLON, T. J. G. ETTEMA, L. M. JOCHUM, L. SCHREIBER, X. CHEN, M. A. LEVER, M. F. POLZ, B. B. JØRGENSEN, A. SCHRAMM, & K. U. KJELDSEN (2017) Microbial community assembly and evolution in subseafloor sediment. Proceedings National Academy of Science (USA), 114: 2940-2945

doi: 10.1073/pnas.1614190114

 

TARPGAARD, I. H., B. B. JØRGENSEN, K. U. KJELDSEN & H. RØY (2017) The marine sufate reducer Desulfobacterium autotrophicum HRM2 can switch between low and high apparent half-saturation constants for dissimilatory sulfate reduction. FEMS Microbiology Ecology,

doi: 10.1093/femsec/fix012

 

VOLPI, M., B. AA. LOMSTEIN, A. SICHERT, H. RØY, B. B. JØRGENSEN & K. U. KJELDSEN (2017) Identity, abundance, and reactivation kinetics of thermophilic fermentative endospores in cold marine sediment and seawater. Frontiers in Microbiology, 8: 131.

doi: 10.3389/fmicb.2017.00131

2016

LAUFER, K., M. NORDHOFF, H. RØY, C. SCHMIDT, S. BEHRENS, B. B. JØRGENSEN & A. KAPPLER (2016) Co-existence of microaerophilic, nitrate-reducing, and phototrophic Fe(II) oxidizers and Fe(III) reducers in coastal marine sediment. Applied and Environmental Microbiology, 82: 1433-1447.

doi:10.1128/AEM.03527-15.

 

NOBU, M. K., J. A. DODSWORTH, S. K. MURUGAPIRAN, C. RINKE, E. A. GIES, G. WEBSTER, P. SCHWIENTEK, P. KILLE, J. PARKES, H. SASS, B. B. JØRGENSEN, A. WEIGHTMAN, W.-T. LIU, S. J. HALLAM, G. TSIAMIS, T. WOYKE & B. P. HEDLUND (2016) Phylogeny and physiology of candidate phylum “Atribacteria” (OP9/JS1) inferred from cultivation-independent genomics. The ISME Journal, 10: 273-286.

doi:10.1038/ismej.2015.97.

 

JØRGENSEN, B. B. & I. P. G. MARSHALL (2016) Slow microbial life in the seabed. Annual Review of Marine Science, 8: 311-332.

doi: 10.1146/annurev-marine-010814-015535.

 

ORSI, W. D., B. B. JØRGENSEN & J. F. BIDDLE (2016) Transcriptional analysis of sulfate reducing and chemolithoautotrophic sulfur oxidizing bacteria in the deep subseafloor. Environmental Microbiology Reports, 8: 452-460.

doi:10.1111/1758-2229.12387

 

WASMUND, K., M. COOPER, L. SCHREIBER, K. G. LLOYD, B. BAKER, D. G. PETERSEN, B. B. JØRGENSEN, R. STEPANAUSKAS, R. REINHARDT, A. SCHRAMM, A. LOY & L. ADRIAN (2016) Single cell genome and group-specific dsrAB sequencing implicate marine members of the class Dehalococcoidia (phylum Chloroflexi) in sulfur cycling. mBio, 7: e00266-16.

doi:10.1128/mBio.00266-16.

 

FLURY, S., A. W. DALE, H. RØY, H. FOSSING, J. B. JENSEN & B. B. JØRGENSEN (2016) Controls on subsurface methane fluxes and shallow gas formation in Baltic Sea sediment (Aarhus Bay, Denmark). Geochimica et Cosmochimica Acta, 188: 297-309. doi:

doi: 10.1016/j.gca.2016.05.037

 

BRAUN, S., Y. MORONO, K. W. BECKER, K.-U. HINRICHS, K. U. KJELDSEN, B. B. JØRGENSEN & B. Aa. LOMSTEIN (2016) Cellular content of biomolecules in sub-seafloor microbial communities. Geochimica et Cosmochimica Acta, 188: 330-351. doi:

doi: 10.1016/j.gca.2016.06.019

 

BRUNNER, B., G. L. ARNOLD, H. RØY, I. A. MÜLLER & B. B. JØRGENSEN (2016) Off limits: sulfate below the sulfate-methane transition. Frontiers in Earth Science, 4: #75.

doi: 10.3389/feart.2016.00075

 

LAUFER, K., J. M. BYRNE, C. GLOMBITZA, C. SCHMIDT, B. B. JØRGENSEN & A. KAPPLER (2016) Anaerobic microbial Fe(II) oxidation and Fe(III) reduction in coastal marine sediments controlled by organic carbon content. Environmental Microbiology 18: 3159-3174.

doi: 10.1111/1462-2920.13387

 

BRAUN, S., Y. MORONO, S. LITTMANN, M. KUYPERS, H. ASLAN, M. DONG, B. B. JØRGENSEN & B. Aa. LOMSTEIN (2016) Size and carbon content of sub-seafloor microbial cells at Landsort Deep, Baltic Sea. Frontiers in Microbiology, 7: #1375.

doi: 10.3389/fmicb.2016.01375.

 

LAUFER, K., H. RØY, B. B. JØRGENSEN & A. KAPPLER (2016) Evidence for the existence of autotrophic nitrate-reducing Fe(II)-oxidizing bacteria in marine coastal sediment. Applied and Environmental Microbiology, 82: 6120-6131.

doi:10.1128/AEM.01570-16.

 

HARDISTY, D. S., N. RIEDINGER, N. J. PLANAVSKY, D. ASAEL, T. ANDRÉN, B. B. JØRGENSEN & T. W. LYONS (2016) A Holocene history of dynamic water column redox conditions in the Landsort Deep, Baltic Sea. American Journal of Science, 316: 713-745.

doi: 10.2475/08.2016.01

 

DE REZENDE, J. R., C. R. J. HUBERT, H. RØY, K. U. KJELDSEN & B. B. JØRGENSEN (2016) Estimating the abundance of endospores of sulfate-reducing bacteria in environmental samples by inducing germination and exponential growth. Geomicrobiology Journal, 34: 338-345.

doi: 10.1080/01490451.2016.1190805

2015

GITTEL, A., J. DONHAUSER, H. RØY, P. R. GIRGUIS & B. B. JØRGENSEN, K. U. KJELDSEN (2015) Ubiquitous presence and novel diversity of anaerobic alkane degraders in cold marine sediments. Frontiers in Microbiology, 6, #1414.

doi: 10.3389/fmicb.2015.01414

 

TORTI, A., M. A. LEVER & B. B. JØRGENSEN (2015) Origin, dynamics, and implications of extracellular DNA pools in marine sediments. Marine Genomics, 24: 185-196.

doi: 10.1016/j.margen.2015.08.007

 

 ROBADOR, A., A. L. MÜLLER, J. E. SAWICKA, D. BERRY, C. R. HUBERT, A. LOY, B. B. JØRGENSEN & V. BRÜCHERT (2015) Activity and community structures of sulfate-reducing microorganisms in polar, temperate and tropical marine sediments. The ISME Journal, 10: 796-809.

doi:10.1038/ismej.2015.157

 

ANDRÉN, T., B.B. JØRGENSEN, C. COTTERILL, S. GREEN and the Expedition 347 Scientific Party (2015) IODP Expedition 347: Baltic Sea Basin paleoenvironment and biosphere. Scientific Drilling, 3, 1-12.

doi:10.5194/sd-20-1-2015

 

GLOMBITZA, C., M. JAUSSI, H. RØY, M.-S. SEIDENKRANTZ, B. A. LOMSTEIN & B. B. JØRGENSEN (2015) Formate, acetate, and propionate as substrates for sulfate reduction in sub-arctic sediments of Southwest Greenland. Frontiers in Microbiology, 6: #846.

doi: 10.3389/fmicb.2015.00846

 

LEVER, M. A., K. ROGERS, K. G. LLOYD, J. OVERMANN, B. SCHINK, R. THAUER, T. M. HOEHLER & B. B. JØRGENSEN (2015) Life under extreme energy limitation: a synthesis of laboratory- and field-based investigations. FEMS Microbiology Reviews, 39: 688-728.

doi: 10.1093/femsre/fuv020

 

NA, H., M. A. LEVER, K. U. KJELDSEN & B. B. JØRGENSEN (2015) Uncultured Desulfobacteraceae and Crenarchaeotal group C3 incorporate 13C-acetate in coastal marine sediment. Environmental Microbiology Reports, 7: 614-622.

doi: 10.1111/1758-2229.12296.

 

ENGELHARDT, T., W. D. ORSI & B. B. JØRGENSEN (2015) Viral activities and life cycles in deep subseafloor sediment. Environmental Microbiology Reports, 7: 868-873.

doi:10.1111/1758-2229.12316.

 

OZUOLMEZ, D., H. NA, M. LEVER, K. U. KJELDSEN, B. B. JØRGENSEN & C. M. PLUGGE. (2015) Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence? Frontiers in Microbiology, 6: #492.

doi: 10.3389/fmicb.2015.00492.

 

LEVER, M. A., A. TORTI, P. EICKENBUSCH, A. B. MICHAUD, T. SANTL-TEMKIV & B. B. JØRGENSEN (2015) A modular method for the extraction of DNA and RNA, and the separation of DNA pools from diverse environmental sample types. Frontiers in Microbiology, 6: #476,

doi: 10.3389/fmicb.2015.00476.

 

ANDRÉN, T., B.B. JØRGENSEN, C. COTTERILL, S. GREEN and the Expedition 347 Scientists (2015) IODP, 347: College Station, TX (Integrated Ocean Drilling Program).

doi:10.2204/iodp.proc.347.101.2015

 

LAGOSTINA, L., T. GOLDHAMMER, H. RØY, T. W. EVANS, M. A. LEVER, B.B. JØRGENSEN, D.G. PETERSEN, A. SCHRAMM & L. SCHREIBER (2015) Ammonia-oxidizing Bacteria of the Nitrosospira Cluster 1 dominate over ammonia-oxidizing Archaea in oligotrophic surface sediments near the South Atlantic Gyre. Environmental Microbiology Reports, 7: 404-413.

doi: 10.1111/1758-2229.12264

 

 

 

2014 HOLMKVIST, L., A. KAMYSHNY JR., V. BRÜCHERT, T. FERDELMAN & B.B. JØRGENSEN (2014) Sulfidization of lacustrine glacial clay upon Holocene marine transgression (Arkona Basin, Baltic Sea). Geochimica et Cosmochimica Acta, 142: 75-94.  
  GLOMBITZA, C., J. PEDERSEN, H. RØY & B.B. JØRGENSEN (2014) Direct analysis of volatile fatty acids in marine sediment porewater by two-dimensional ion chromatography-mass spectrometry. Limnology and Oceanography: Methods, 12: 455-468.  
  MÜLLER, A., J.R. DE REZENDE, C.R.J. HUBERT, K.U. KJELDSEN, I. LAGKOUVARDOS, D. BERRY, B.B. JØRGENSEN & A. LOY (2014) Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents. The ISME Journal, 8: 1153-1165.  
  SCHAUER, R., N. RISGAARD-PETERSEN, K.U. KJELDSEN, J.J. BJERG, B.B. JØRGENSEN, A. SCHRAMM & L.P. NIELSEN (2014) Succession of cable bacteria and electric currents in marine sediment. The ISME Journal, 8: 1314-1322.  
  RØY, H., H.S. WEBER, I.H. TARPGAARD, T.G. FERDELMAN & B.B. JØRGENSEN (2014) Sulfate reduction rate measurement in marine sediment using 35S-tracer. Limnology and Oceanography: Methods, 12: 196-211.  

2013

WASMUND, K., L. SCHREIBER, K.G. LLOYD, D.G. PETERSEN, A. SCHRAMM, R. STEPANAUSKAS, B.B. JØRGENSEN, L. ADRIAN (2013) Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi. The ISME Journal, 1-15.  
STEEN, A.D., B.B. JØRGENSEN, B.AA. LOMSTEIN (2013) Abiotic racemization kinetics of amino acids in marine sediments. PLoS ONE, 8: e71648. doi:10.1371/journal.pone.0071648.  
CONTRERAS, S., P. MEISTER, B. LIU, X. PRIETO-MOLLAR, K.U. HINRICHS, A. KHALILI, T.G. FERDELMAN, M.M.M. KUYPERS, B.B. JØRGENSEN (2013) Cyclic 100-ka (glacial-interglacial) migration of subseafloor redox zonation on the Peruvian shelf. Proceedings of the National Academy of Science, USA, 110: 18098-18103.  
MILETTO, M., T.G. FERDELMAN, P.L.E. BODELIER, B.B. JØRGENSEN, H.J. LAANBROEK (2013) Effect of the aerenchymatous helophyte Glyceria maxima on the sulfate-reducing communities in two contrasting riparian grassland soils. Plant Soil, 370: 73-87.  
ARNDT, S, B.B. JØRGENSEN, D.E. LAROWE, J.J. MIDDELBURG, R.D. PANCOST, P. REGNIER (2013) Quantifying the degradation of organic matter in marine sediments: A review and synthesis. Earth-Science Reviews, 123: 53-86.  
LLOYD, K.G, L. SCHREIBER, D.G. PETERSEN, K.U. KJELDSEN, M.A. LEVER, A.D. STEEN, R. STEPANAUSKAS, M. RICHTER, S. KLEINDIENST, S. LENK, A. SCHRAMM & B.B. JØRGENSEN (2013). Predominant archaea in marine sediments degrade detrital proteins. Nature, 496: 215-218.  
KÖNNEKE, M., J. KUEVER, A. GALUSHKO, B.B. JØRGENSEN (2013) Desulfoconvexum algidum gen. nov., sp. nov. a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment. International Journal of Systematic and Evolutionary Microbiology, 63: 959-964.  
THANG, N. M., V. BRÜCHERT, M. FOMOLO, G. WEGENER, L. GINTERS, B. B. JØRGENSEN & T. G. FERDELMAN. (2013) The Impact of Sediment and Carbon Fluxes on the Biogeochemistry of Methane and Sulfur in Littoral Baltic Sea Sediments (Himmerfjärden, Sweden). Estuaries and Coasts, 36: 98-115.  
HOEHLER, T.M. & B.B. JØRGENSEN (2013) Microbial life under extreme energy limitation. Nature Reviews Microbiology, 11: 83-94.  
MEISTER, P., B. LIU, T. G. FERDELMAN, B. B. JØRGENSEN & A. KHALILI (2013) Control of sulphate and methane distributions in marine sediments by organic matter reactivity. Geochimica et Cosmochimica Acta, 104: 183-193.  

2012

LANGERHUUS, A. T., H. RØY, M. A. LEVER, Y. MORONO, F. INAGAKI, B. B. JØRGENSEN & B. Aa. LOMSTEIN. (2012) Endospore abundance and D:L-amino acid modeling of bacterial turnover in holocene marine sediment (Aarhus Bay). Geochimica et Cosmochimica Acta, 99: 87-99.  
JØRGENSEN, B.B. (2012) Shrinking majority of the deep biosphere. Proceedings of the National Academy of Science, USA, 109: 15976-15977.  
RØY, H., J. KALLMEYER, R. R. ADHIKAR, R. POCKALNY, B. B. JØRGENSEN & S. D’HONDT (2012) Aerobic microbial respiration in 86-million-year-old-deep-sea red clay. Science, 336: 922-925.  
LOMSTEIN, B. AA., A. T. LANGERHUUS, S. D’HONDT, B. B. JØRGENSEN & A. SPIVACK (2012) Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment. Nature, 484: 101-104.  
ROSA DE REZENDE, JULIA, KASPER URUP KJELDSEN, CASEY R J HUBERT, KAI FINSTER, ALEXANDER LOY AND BO BARKER JØRGENSEN (2012) Dispersal of thermophilic Desulfotomaculum endospores into Baltic Sea sediments over thousands of years. The ISME Journal (2012), 1-13.  

LOMSTEIN, BENTE AA. & BO BARKER JØRGENSEN (2012) Pre-column liquid chromatographic determination of dipicolinic acid from bacterial endospores. Limnology and Oceanography: Methods, 10: 227-233.
 
MITSUNOBU, S., F. SHIRAISHI, H. MAKITA, B. N. ORCUTT, S. KIKUCHI, K. U. KJELDSEN, B. B. JØRGENSEN & Y. TAKAHASHI (2012) Bacteriogenic Fe(III) (Oxyhydr)oxides Characterized by Synchrotron Microprobe Coupled with Spatially Resolved Phylogenetic Analysis. Environ. Sci. Technol., 46: 3304–3311.  
LETTMANN, K. A., N. RIEDINGER, R. RAMLAU, N. KNAB, M. E. BÖTTCHER, A. KHALIF, J.-O. WOLLF, B. B. JØRGENSEN (2012) Estimation of biogeochemical rates from concentration profiles: A novel inverse method. Eustarine, Coastal and Shelf Science, 100, 26-37.  
SAWICKA, J. E., B. B. JØRGENSEN & V. BRÜCHERT (2012) Temperature characteristics of bacterial sulfate reduction in continental shelf and slope sediments. Biogeosciences, 9: 3425-3435.  

2011

Holmkvist, L., A. Kamyshny Jr., C. Vogt, K. Vamvakopoulos, T. G. Ferdelman & B. B Jørgensen (2011) Sulfate reduction below the sulfate-methane transition in Black Sea sediments. Deep-Sea Research, Part I, 58: 493-504.
JØRGENSEN, B.B. (2011) Deep subseafloor microbial cells on physiological standby, PNAS, 108: 18193-18194.
HOLMKVIST, L., T. G. FERDELMAN & B. B. JØRGENSEN (2011) A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark). Geochimica et Cosmochimica Acta, 75: 3581-3599.
DUNKER, R., H. RØY, A. KAMP & B. B. JØRGENSEN (2011) Motility patterns of filamentous sulfur bacteria, Beggiatoa spp.. FEMS Microbiology Ecology, 77: 176-185.
TARPGAARD, I. H., H. RØY, B.B. JØRGENSEN (2011) Concurrent low- and high-affinity sulfate reduction kinetics in marine sediment, Geochimica et Cosmochimica Acta, 75: 2997-3010.

2010

Holmkvist, L., E. T. Arning, K. Küster, V. Vandieken, J. Peckmann, M. Zabel & B. B. Jørgensen (2010) Phosphate geochemistry, mineralization processes, and Thioploca distribution in shelf sediments off central Chile. Marine Geology, 277: 61-72.
Jørgensen, B. B., R. Dunker, S. Grünke & H. Røy (2010) Filamentous sulfur bacteria, Beggiatoa spp., in arctic marine sediments (Svalbard,79°N), FEMS Microbiology Ecology, 73: 500-513.
Dunker, R., H. Røy & B. B. Jørgensen (2010) Temperature regulation of gliding motility
in filamentous sulfur bacteria, Beggiatoa spp., FEMS Microbiology Ecology, 73: 234-242.
Ridinger, N., Y. S. Lin, B. Brunner, A. Vossmeyer, T. G. Ferdelman & B. B. Jørgensen (2010) Methane at the sediment-water transition in Black Sea sediments. Chemical Geology, 274: 29-37.
Jørgensen, B. B. (2010) Big sulfur bacteria, ISME Journal, 4: 1083-1084.
Sawicka, J. E., A. Robador, C. Hubert, B. B. Jørgensen & V. Brüchert (2010) Effects of freeze-thaw cycles on anaerobic microbial processes in an Arctic intertidal mud flat, ISME Journal, 4: 585-594.
Jørgensen, B. B. & R. J. Parkes (2010) Role of sulfate reduction and methane for anaerobic carbon cycling in eutrophic fjord sediments (Limfjorden, Denmark). Limnology and Oceanography, 55: 1338-1352.
Hubert, C., C. Arnosti, V. Brüchert, A. Loy, V. Vandieken & B. B. Jørgensen (2010) Thermophilic anaerobes in arctic marine sediments induced to mineralize complex organic matter at high temperature. Environmental Microbiology, 12: 1089-1104.
Al-Najjar, M., D. de Beer, B. B. Jørgensen, M. Kühl & L. Polerecky (2010) Conversion and conservation of light energy in a photosynthetic microbial mat. ISME Journal, 4: 440-449

2009

Hubert, C., A. Loy, M. Nickel, C. Arnosti, C. Baranyi, V. Brüchert, T. Ferdelman, K. Finster, F. M. Christensen, J. Rosa de Rezende, V. Vandieken & B. B. Jørgensen (2009) A constant flux of diverse thermophilic bacteria into the cold arctic seabed. Science, 325: 1541-1544.
Robador, A., V. Brüchert & B. B. Jørgensen (2009) The impact of temperature change on the activity and community composition of sulfate-reducing bacteria in arctic versus temperate marine sediments. Environmental Microbiology, 11: 1692-1703.
Teske, A., B. B. Jørgensen & V. A. Gallardo (2009) Filamentous bacteria inhabiting the sheaths of marine Thiploca spp. on the Chilean continental shelf. FEMS Microbiology Ecology, 68: 164-172.
Høgslund, S., N. P. Revsbech, J. G. Kuenen, B. B. Jørgensen, V. A. Gallardo, J. van de Vossenberg, J. L. Nielsen, L. Holmkvist, E. T. Arning & L. P. Nielsen (2009) Physiology and behaviour of marine Thioploca. The ISME Journal, 3: 647-657.
Leloup, J., H. Fossing, K. Kohls, L. Holmkvist, C. Borowski & B. B. Jørgensen (2009) Sulfate-reducing bacteria in marine sediment (Aarhus Bay, Denmark): abundance and diversity related to geochemical zonation. Environmental Microbiology, 11: 1278-1291.
Lomstein, B. Aa., J. Niggemann, B. B. Jørgensen & A. T. Langerhuus (2009) Accumulation of prokaryotic remains during organic matter diagenesis in surface sediments off Peru. Limnology and Oceanography, 54: 1139-1151.
Dale, A. W., P. Regnier, P. van Cappellen, H. Fossing, J. B. Jensen & B. B. Jørgensen (2009) Remote quantification of methane fluxes in gassy marine sediments through seismic survey. Geology, 37: 235-238.
Røy, H., K. Vopel, M. Huettel & B. B. Jørgensen (2009) Sulfide assimilation by ectosymbionts of the sessile ciliate, Zoothamnium niveum. Marine Biology, 156: 669-677.
Knab, N. J., B. A. Cragg, L. Holmkvist, C. Borowski, R. J. Parkes & B. B. Jørgensen (2009) Regulation of anaerobic methane oxidation in sediments of the Black Sea. Biogeosciences, 5: 2305-2341.

2008

Nickel, M., V. Vandieken, V. Brüchert & B B. Jørgensen (2008) Microbial Mn(IV) and Fe(III) reduction in northern Barents Sea sediments under different conditions of ice cover and organic carbon deposition. Deep-Sea Research II, 55:2390-2398.
Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillion, F. Horreard, R. Amann, B. B. Jørgensen & M. M. M. Kuypers (2008) A single-cell view on the ecophysiology of anaerobic phototrophic bacteria. Proceedings of the National Academy of Sciences of the United States of America, 105:17861-17866.
Khalili, A., K. Javadi, A. Saidi, A. Goharzadeh, M. Huettel & B. B. Jørgensen (2008) On generating uniform bottom shear stress. Part I: A quantitative study of microcosm chambers. Recent Patents on Chemical Engineering, 1: 174-191.
Finke, N. & B. B. Jørgensen (2008) Response of fermentation and sulfate reduction to experimental temperature changes in temperate and Arctic marine sediments. The ISME Journal, 2: 815-829.
Dale, A. W., D. R. Aguilera, P. Regnier, H. Fossing, N. J. Knab & B. B. Jørgensen (2008) Seasonal dynamics of the depth and rate of anaerobic oxidation of methane in Aarhus Bay (Denmark) sediments. Journal of Marine Research, 66: 127-155.
Knab, N. J., A. W. Dale, K. Lettmann, H. Fossing & B. B. Jørgensen (2008) Thermodynamic and kinetic control on anaerobic oxidation of methane in marine sediments. Geochimica et Cosmochimica Acta, 72: 3746-3757.
Dale, A. W., P. Regnier, N. J. Knab, B. B. Jørgensen & P. Van Cappellen (2008) Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): II. Reaction-transport modeling. Geochimica et Cosmochimica Acta, 72: 2880–2894.
Knab, N. J., B. A. Cragg, C. Borowski, R. J. Parkes, R. Pancost & B. B. Jørgensen (2008) Anaerobic oxidation of methane (AOM) in marine sediments from the Skagerrak (Denmark): I. Geochemical and microbiological analyses. Geochimica et Cosmochimica Acta, 72: 2868–2879.
Arning, E. T., D. Birgel, H. N. Schulz-Vogt, L. Holmkvist, B. B. Jørgensen, A. Larson & J. Peckmann (2008) Lipid biomarker patterns of phosphogenic sediments for upwelling regions. Geomicrobiology Journal, 25: 69-82.
Mussmann, M., F. Z. Hu, M. Richter, D. de Beer, A. Preisler, B. B. Jørgensen, M. Hunemann, F. O. Glöckner, R. Amann, W. J. H. Koopman & R. S. Lasken (2008) Insights into the genome of large sulfur bacteria revealed by analysis of single filaments. PLoS Biology, 5: e230. doi: 10.1371/journal.pbio.0050230.
Boudreau, B. P., C. Arnosti, B. B. Jørgensen & D. E. Canfield (2008) Comment on “Physical Model for the Decay and Preservation of Marine Organic Carbon”. Science, 319: 1616.
Zopfi, J., M. E. Böttcher & B. B. Jørgensen (2008) Biogeochemistry of sulfur and iron in Thioploca-colonized surface sediments in the upwelling area off central Chile. Geochimica et Cosmochimica Acta, 72: 827-843.

2007

Wakeham, S. G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jørgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damsté, H. M. Talbot & D. Woebken (2007) Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Organic Chemistry, 38 : 2070-2097.
Jørgensen, B. B. & A. Boetius (2007) Feast and Famine – microbial life in the deep-sea bed. Nature Review Microbiology, 5: 770-781.
D´Hondt, S., F. Inagaki, T. Ferdelman, B. B. Jørgensen, K. Kato, P. Kemp, P. Sobecky, M. Sogin & K. Takai (2007) Exploring subseafloor life with the Integrated Ocean Drilling Program. Scientific Drilling, 5: 26-37.
Preisler, A., D. de Beer, A. Lichtschlag, G. Lavik, A. Boetius & B. B. Jørgensen (2007) Biological and chemical sulfide oxidation in a Beggiatoa inhabited marine sediment. The ISME Journal, 1: 341-353.
Polerecky, L., A. Bachar, R. Schoon, M. Grinstein, B. B. Jørgensen, D. de Beer & H. Jonkers (2007) Contribution of Chloroflexus respiration to oxygen cycling in a hypersaline microbial mat from Lake Chiprana, Spain. Environmental Microbiolgy, 9: 2007-2024.
Kuypers, M. M. M. & B. B. Jørgensen (2007) The future of single-cell environmental microbiology. Environmental Microbiolgy, 9: 6-7.
Parkes, R. J., B. A. Cragg, N. Banning, F. Brock, G. Webster, J. C. Fry, E. Hornibrook, R. D. Pancost, S. Kelly, N. Knab, B. B. Jørgensen, J. Rinna & A. J. Weightman (2007) Biogeochemistry and biodiversity of methane cycling in subsurface marine sediments (Skagerak, Denmark). Environmental Microbiology, 9: 1146-1161.
Finke, N., T. M. Hoehler & B. B. Jørgensen (2007) Hydrogen ´leakage´ during methanogenesis from methanol and methylamine: implications for anaerobic carbon degradation pathways in aquatic sediments. Environmental Microbiology, 9: 1060-1071.
Finke, N., V. Vandieken & B. B. Jørgensen (2007) Acetate, lactate, propionate, and isobutyrate as electron donors for iron and sulfate reduction in Arctic marine sediments, Svalbard. FEMS Microbiology Ecology, 59: 10-22.
Glud, R. N., P. Berg, H. Fossing & B. B. Jørgensen (2007) Effect of the diffusive boundary layer on benthic mineralization and O2 distribution: A theoretical model analysis. Limnology and Oceanography, 52: 547-557
Leloup, J., A. Loy, N. J. Knab, C. Borowski, M. Wagner & B. B. Jørgensen (2007) Diversity and abundance of sulfate-reducing microorganisms in the sulfate and methane zones of a marine sediment, Black Sea. Environmental Microbiology, 9: 131-142.

2006

Vandieken, V., N. Finke and B. B. Jørgensen (2006) Pathways to carbon oxidation in an Arctic fjord sediment (Svalbard) and isolation of psychrophilic and psychrotolerant Fe(III)-reducing bacteria. Marine Ecology Progress Series, 322: 29-41.
Vandieken, V., M. Nickel and B. B. Jørgensen (2006) Carbon mineralization in Arctic sediments northeast of Svalbard: Mn(IV) and Fe(III) reduction as principal anaerobic respiratory pathways. Marine Ecology Progress Series, 322: 15-27.
Arnosti, C. and B. B. Jørgensen (2006) Organic carbon degradation in Arctic marine sediments, Svalbard: A comparison of initial and terminal steps. Geomicrobiology Journal, 23: 551-563.
Jørgensen, B. B. and S. D´ Hondt (2006) A starving majority deep beneath the seafloor. Science, 314: 932-934.
Inagaki, F., M. Kuypers, U. Tsunogai, J. Ishibashi, K. Nakamura, T. Treude, S. Ohkubo, M. Nakaseama, K. Gena, H. Chiba, H. Hirayama, T. Nunoura, K. Takai, B. B. Jørgensen, K. Horikoshi and A. Boetius (2006) Microbial community in a sediment-hosted CO2 lake of the southern Okinawa Trough hydrothermal system. PNAS, 103: 14164-14169.
Lomstein, B. Aa., B. B. Jørgensen, C. S. Schubert and J. Niggemann (2006) Amino acid biogeo- and stereochemistry in coastal Chilean sediments. Geochimica et Cosmochimica Acta, 70: 2970-2989.
Inagaki, F., T. Nunoura, S. Nakagawa, A. Teske, M. Lever, A. Lauer, M. Suzuki, K. Takai, M. Delwiche, F. S. Colwell, K. H. Nealson, K. Horikoshi, S. D'Hondt and B. B. Jørgensen (2006) Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments on the Pacific Ocean Margin. Proceedings of the National Academy of Science, USA, 103: 2815-2820.
Böttcher, M. E., T. G. Ferdelman, B. B. Jørgensen, R. E. Blake, A. V. Surkov and G. E. Claypool (2006) Sulfur isotope fractionation by the deep biosphere within sediments of the Eastern Equatorial Pacific and Peru Margin. Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.
Blake, R. E., A. V. Surkov, M. E. Böttcher, T. G. Ferdelman & B. B. Jørgensen (2006) Oxygen isotope composition of dissolved sulphate in deep-sea sediments: Eastern Equatorial Pacific Ocean. Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.
Vandieken, V., C. Knoblauch and B.B. Jørgensen (2006) Desulfotomaculum arcticum sp. nov., a novel spore-forming, moderately thermophilic, sulfate-reducing bacterium isolated from a permanently cold fjord sediment of Svalbard. Journal of Systematic and Evolutionary Microbiology, 56: 687-690.
Vandieken, V., C. Knoblauch and B.B. Jørgensen (2006) Desulfovibrio frigidus sp. nov. and Desulfovibrio ferrireducens sp. nov., two psychrotolerant bacteria isolated from Arctic fjord sediments (Svalbard) with the ability to reduce Fe(III). International Journal of Systematic and Evolutionary Microbiology, 56: 681-685.
Vandieken, V., M. Mußmann, H. Niemann and B.B. Jørgensen (2006) Desulfuromonas svalbardensis sp. nov. and Desulfuromusa ferrireducens sp. nov. psychrophilic Fe(III)-reducing bacteria isolated from Arctic sediments, Svalbard. International Journal of Systematic and Evolutionary Microbiology, 56: 1133-1139.
Jørgensen, B.B., S.L. D’Hondt and D.J. Miller. (2006) Leg 201 Synthesis: Controls on microbial communities in deeply buried sediments. In Jørgensen, B.B., S.L. D’Hondt and D.J. Miller (eds.) Proc. ODP, Sci. Res. 201. Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.
Jørgensen, B. B. (2006) Bacteria and marine biogeochemistry, pp. 173-207. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry, 2nd ed. Springer, Berlin.
Jørgensen, B. B., and S. Kasten (2006) Sulfur cycling and methane oxidation, pp. 271-309. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry, 2nd ed. Springer, Berlin.

2005

Treude, T., M. Krüger, A. Boetius and B.B. Jørgensen (2005) Environmental control on anaerobic oxidation of methane in gassy marine sediments of Eckernförde bay (German Baltic). Limnology and Oceanography, 50: 1771-1786.
Jørgensen, B.B., A. Teske and A. Ahmad (2005) Thioploca. In N.R. Krieg, J.T. Staley and D.J. Brenner (eds.) Bergey's Manual of Systematic Bacteriology, Vol. 2, 171-178.
Schulz, H.N., and B.B. Jørgensen (2005) Thiomargarita. In N.R. Krieg, J.T. Staley and D.J. Brenner (eds.) Bergey's Manual of Systematic Bacteriology, Vol. 2, 169-171.
Goharzadeh, A., A. Khalili and B. B. Jørgensen (2005) Transition layer thickness at a fluid-porous interface. Physics of Fluids, 17: 57102 (online version).
Parkes, R. J., G. Webster, B. A. Cragg, A. J. Weightman, C. J. Newberry, T. G. Ferdelman, J. Kallmeyer, B. B. Jørgensen, I. W. Aiello & J. C. Fry (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature, 436: 390-394.
Treude, T., J. Niggemann, J. Kallmeyer, P. Wintersteller, C. J. Schubert, A. Boetius & B. B. Jørgensen (2005) Anaerobic oxidation of methane and sulfate reduction along the Chilean continental margin. Geochimica et Cosmochimica Acta, 69: 2767-2779.
Kuypers, M. M. M., G. Lavik, D. Woebken, M. Schmid, B. M. Fuchs, R. Amann, B. B. Jørgensen & M. S. M. Jetten (2005) Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxication. Proceedings of the National Academy of Sciences, USA, 102: 6478-6483.
Jørgensen, B. B., R. N. Glud & O. Holby (2005) Oxygen distribution and bioirrigation in Arctic fjord sediments (Svalbard, Barents Sea). Marine Ecology Progress Series, 292: 85-95.
Schippers, A., L. N. Neretin, J. Kallmeyer, T. G. Ferdelman, B. A. Cragg, R. J. Parkes & B. B. Jørgensen (2005) Prokaryotic cells of the deep sub-seafloor biosphere identified as living bacteria. Nature, 433: 861-864.
Røy, H., M. Hüttel & B. B. Jørgensen (2005) The influence of topography on the functional exchange surface of marine soft sediments, assessed from sediment topography measured in situ. Limnology and Oceanography, 50(1): 106-112.

2004

D'Hondt, S., B. B. Jørgensen,, D. J. Miller, A. Batzke, R. Blake, B. Cragg, H. Cypionka, G. R. Dickens, T. Ferdelman, K. U. Hinrichs, N. G. Holm, R. Mitterer, A. Spivack, G. Z. Wang, B. Bekins, B. Engelen, K. Ford, G. Gettemy, S. D. Rutherford, H. Sass, C. G. Skilbeck, I. W. Aiello, G. Guerin, C. H. House, F. Inagaki, P. Meister, T. Naehr, S. Niitsuma, R. J. Parkes, A. Schippers, D. C. Smith, A. Teske, J. Wiegel, C. N. Padilla & J. L. S. Acosta (2004) Distributions of microbial activities in deep subseafloor sediments. Science, 306: 2216-2221.
Mienert, J., P. P. E. Weaver, S. Berné, W. C. Dullo, D. Evans, A. Freiwald, J.-P. Henriet, B. B. Jørgensen, G. Lericolais, V. Lykousis, J. Parkes, F. Trincardi & G. Westbrook (2004) Overview of recent, ongoing, and future investigations on the dynamics and evolution of European margins. Oceanography, 17: 12-29.
Kallmeyer, J., T. G. Ferdelman, A. Weber, H. Fossing & B. B. Jørgensen (2004) A cold chromium distillation procedure for radiolabled sulfide applied to sulfate reduction measurements. Limnology and Oceanography: Methods, 2: 171-180.
Røy, H., M. Hüttel & B. B. Jørgensen (2004) Transmission of oxygen concentration fluctuations through the diffusive boundary layer overlying aquatic sediments. Limnology and Oceanography, 49: 686-692.
Jørgensen, B. B. & D. C. Nelson (2004) Sulfide oxidation in marine sediments: Geochemistry meets microbiology, pp. 36-81. In J. P. Amend, K. J. Edwards, and T. W. Lyons (eds.) Sulfur Biogeochemistry - Past and Present. Geological Society of America.
Jørgensen, B. B., M. E. Böttcher, H. Lüschen, L. Neretin & I. Volkov (2004) Anaerobic methane oxidation and a seep H2S sink generate isotopically heavy sulfides in Black Sea sediments. Geochimica et Cosmochimica Acta, 68: 2095-2118.
Neretin, L. N., M. E. Böttcher, B. B. Jørgensen, I. I. Volkov, H. Lüschen & K. Hilgenfeldt (2004) Pyrite formation via greigite in limnic sediments of the Black Sea. Geochimica et Cosmochimica Acta, 68: 2081-2093.
Wild, C., M. Huettel, A. Klueter, S. G. Kremb, M. V. M. Rasheed & B. B. Jørgensen (2004) Coral mucus functions as an energy carrier and particle trap in the reef ecosystem. Nature 428: 66-70.

2003

Elvert, M., A. Boetius, K. Knittel & B. B. Jørgensen (2003) Characterization of specific membrane fatty acids as chemotaxonomic markers for sulfate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiology Journal, 20: 403-419.
Berg, P., H. Røy, F. Janssen, V. Meyer, B. B. Jørgensen, M. Hüttel & D. de Beer (2003) Oxygen uptake by aquatic sediments measured with a novel non-invasive EDDY-correlation technique. Marine Ecology Progress Series, 261: 75-83.
Revsbech, N. P. & B. B. Jørgensen (2003) Mikroorganismernes rolle i akvatiske milijøer, p. 365-387. In A. W. Hansen et. al. (eds.), Topforskning ved Aarhus Universitet - en jubilæumsantologi. Acta Jutlandica 78, Aarhus Universitetsforlag.
Jørgensen, B. B. (2003) Life in the deep sub-seafloor biosphere. Energy, Exploration & Exploitation, 21: 319-322.
Brüchert, V., B. B. Jørgensen, K. Neumann, D. Riechmann, M. Schlösser & H. Schulz. (2003) Regulation of bacterial sulfate reduction and hydrogen sulfide fluxes in the central Namibian coastal upwelling zone. Geochim. Cosmochim. Acta, 67: 4505-4518.
Treude, T., A. Boetius, K. Knittel, K. Wallmann & B. B. Jørgensen (2003) Anaerobic oxidation of methane above gas hydrates at Hydrate Ridge, NE Pacific. Marine Ecology Progress Series, 264: 15-20.
D'Hondt, S., B. B. Jørgensen, J. Miller et. al. (2003) Proc. ODP, Init. Repts., 201 [CD-ROM ]. Available from: Ocean Drilling Program, Texas A&M University, College Station TX 77845-9547, USA.
Jetten, M. S. M., O. Sliekers, M. M. M. Kuypers, T. Dalsgaard, L. van Niftrik, I. Cirpus, K. van de Pas-Schoonen, G. Lavik, B. Thamdrup, D. Les Pasilier, H. op den Camp, S. Hulth, L. P. Nielsen, W. Abma, K. Third, P. Engström, J. G. Kuenen, B. B. Jørgensen, D. Canfield, J. S. Sinninghe Damsté, N. P. Revsbech, J. Fuerst, J. Weissenbach, M. Wagner, I. Schmidt, M. Schmid & M. Strous (2003) Anaerobic ammonium oxidation by marine and freshwater planctomycete-like bacteria. Applied Microbiology Biotechnology, 63: 107-114.
Kallmeyer, J., T. G. Ferdelman, K.-H. Jansen & B. B. Jørgensen. (2003) A high-pressure thermal gradient block for investigating microbial activity in multiple deep-sea samples. J. Microbiol. Methods, 55: 165-172.
Hemleben, C., K. Hoernle, B. B. Jørgensen & W. Roether (eds.). 2003. Ostatlantik-Mittelmeer-Schwarzes Meer, Cruise No. 51, 12 September-28 December 2001. METEOR-Berichte, Universität Hamburg, 03-1, 225 pp.
Witte, U., F. Wenzhöfer, S. Sommer, A. Boetius, P. Heinz, N. Aberle, M. Sand, A. Cremer, W.-R. Araham, B. B. Jørgensen & O. Pfannkuche (2003) In situ experimental evidence of the fate of a phytodetritus pulse at the abyssal sea floor. Nature, 424: 763-766.
Neretin, L., A. Schippers, A. Pernthaler, K. Hamann, R. Amann & B. B. Jørgensen (2003) Quantification of dissimilatory (bi)sulphite reductase gene expression in Desulfobacterium autotrophicum using real-time RT-PCR. Environ. Microbiol. 5: 660-671.
D'Hondt, S., B. B. Jørgensen, J. Miller, and the Leg 201 Scientific Party (2003) ODP Leg 201 explores microbial life in deeply buried marine sediments off Peru, JOIDES Journal, Vol. 29, No. 1, 11-15.
Glud, R. N., J. K. Gundersen, H. Røy & B. B. Jørgensen (2003). Seasonal dynamics of benthic O2 uptake in a semienclosed bay: Importance of diffusion and faunal activity. Limnol. Oceanogr., 48: 1265-127
Kuypers, M. M. M., A. O. Sliekers, G. Lavik, M. Schmid, B. B. Jørgensen, J. G. Kuenen, J. S. Sinninghe Damsté, M. Strous & M. S. M. Jetten (2003) Anaerobic ammonium oxidation by anammox bacteria in the Black Sea. Nature, 422: 608-611.
Boetius, A., B. B. Jørgensen, R. Amann, J.P. Henriet, K.-U. Hinrichsen, K. Lochte, B.J. Macgregor & G. Voordouw (2003) Microbial systems in sedimentary environments of continental margins, pp. 479-495 In Wefer, G., D. Billet, D. Hebbeln, B. B. Jørgensen, M. Schlüter, T. v. Weering (eds.) Ocean Margin Systems. Springer Verlag, Berlin.

2002

Michaelis, W., R. Seifert, K. Nauhaus, T. Treude, V. Thiel, M. Blumberg, K. Knittel, A. Gieseke, K. Peterknecht, T. Pape, A. Boetius, R. Amann, B. B. Jørgensen, F. Widdel, J. Peckmann, N.V. Pemenov, M.B. Gulin (2002) Microbial reefs in the Black Sea fueled by anaerobic oxidation of methan. Science, 297: 1013-1015.
Røy, H., M. Hüttel & B. B. Jørgensen (2002) The role of small scale sediment topography for oxygen flux across the diffusive boundary layer. Limnol. Oceanogr., 47: 837-847.
Weber, A. & B. B. Jørgensen (2002) Bacterial sulfate reduction in hydrothermal sediments of the Guaymas Basin, Gulf of California, Mexico. Deep-Sea Res., 49: 827-841.
Schippers, A. & B. B. Jørgensen (2002) Biogeochemistry of pyrite and iron sulfide oxidation in marine sediments. Geochim. Cosmochim. Acta 66: 85-92.

2001

Jørgensen, B. B. (2001) Space for hydrogen. Nature, 412: 286-289.

Zopfi, J., T. Kjæer, L. P. Nielsen & B. B. Jørgensen (2001) Ecology of Thioploca spp.: Nitrate and sulfur storage in relation to chemical microgradients and influence of Thioploca spp. on the sedimentary nitrogen cycle. Appl. Environm. Microbiol., 67: 5530-5537.
Fones, G.R., W. Davison, O. Holby, B. B. Jørgensen & B. Thamdrup (2001) High-resolution metal gradients measured by in situ DGT/DET deployments in Black Sea sediments using an autonomous benthic lander. Limnol. Oceanogr., 46(4): 982-988.
Jørgensen, B. B., A. Weber & J. Zopfi (2001) Sulfate reduction and anaerobic methane oxidation in Black Sea sediments. Deep-Sea Res., 48: 2097-2120.
Weber, A., W. Riess, F. Wenzhoefer & B.B. Jørgensen (2001) Sulfate reduction in Black Sea sediments: in situ and laboratory radiotracer measurements from the shelf to 2000 m depth. Deep-Sea Res., 48: 2073-2096.
Schulz, H.N. & B. B. Jørgensen (2001) Big bacteria. Annu. Rev. Microbiol. 55: 105-137.
Jørgensen, B.B., U. Franke, G. Holst & H. Røy (2001) Oxygen transport across the benthic boundary layer: from a 1-D to a 3-D view. ASLO Bulletin, 10 (2): 21-25.
Brüchert, V., C. Knoblauch & B. B. Jørgensen (2001) Controls on stable sulfur isotope fractionation during bacterial sulfate reduction in Arctic sediments. Geochim. Cosmochim. Acta, 65: 763-776.
Zopfi, J., T.G. Ferdelman, B. B. Jørgensen, A. Teske & B. Thamdrup (2001) Influence of water column dynamics on sulfide oxidation and other major biogeochemical processes in the chemocline of Mariager Fjord (Denmark). Mar. Chem., 74: 29-51.
Schippers, A. & B. B. Jørgensen (2001) Oxidation of pyrite and iron sulfide by manganese dioxide in marine sediments. Geochim. Cosmochim. Acta, 65: 915-922.
Bian, L., K.-U. Hinrichs, T. Xie, S. C. Brassell, N. Iversen, H. Fossing, B. B. Jørgensen & J. M. Hayes (2001) Algal and archaeal polyisoprenoids in a recent marine sediment: Molecular isotopic evidence for anaerobic oxidation of methane. Proc. Natl. Acad. Sci., Geochemistry Geophysics Geosystems, 2: 2000GC000112.
Jørgensen, B.B. (2001) Life in the diffusive boundary layer, Chapter 14. In B. P. Boudreau and B. B. Jørgensen (eds.), The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford University Press, 348-373.
Boudreau, B.P. & B. B. Jørgensen (2001) Diagenesis and the benthic boundary layer, Chapter 9. In B. P. Boudreau and B. B. Jørgensen (eds.), The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford University Press, 211-244.
Boudreau, B.P. & B. B. Jørgensen (eds.) (2001) The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford University Press.

2000

Hansen, J. W., B. Thamdrup & B. B. Jørgensen (2000) Anoxic incubation of sediment in gas-tight plastic bags: A method for biogeochemical process studies. Mar. Ecol. Prog. Ser., 208: 273-282.
Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jørgensen & R. Amann (2000) Community structure, cellular rRNA content and activity of sulfate-reducing bacteria in marine Arctic sediments. Appl. Environ. Microbiol., 66: 3592-3602.
Boetius, A., K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B. B. Jørgensen, U. Witte & O. Pfannkuche (2000) A marine microbial consortium aparently mediating anaerobic oxidation of methane. Nature, 407: 623-626.
Schulz, H.N., B. Strotmann, V.A. Gallardo & B. B. Jørgensen (2000) Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepción, Chile. Mar. Ecol. Prog. Ser., 200: 117-126.
Kasten, S. & B. B. Jørgensen (2000) Sulfate reduction in marine sediments, pp. 263-281. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry. Springer, Berlin.
Jørgensen, B. B. (2000) Bacteria and marine biogeochemistry, pp. 173-207. In H. D. Schulz and M. Zabel (eds.), Marine Geochemistry. Springer, Berlin.
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