Publikationen 1996

Publikationen 1996

Department of Biogeochemistry

Boudreau, B.P.: Diagenetic models and their implementation. Modelling Transport and Reactions in Aquatic Sediments. 1 edition, ISBN 10: 3540611258, Springer-Verlag, Heidelberg (1996), 430 pp.
Canfield, D.E.: Evolution of the sulfur cycle. In: Fourth international symposium on the geochemistry of the Earth surface. pp. 23-27, S.H. Bottrell (ed.), International Association of Geochemistry and Cosmochemistry (1996). Full Text
Canfield, D.E. and A. Teske.: Late Proterozoic rise in atmospheric oxygen from phylogenetic and sulphur isotope studies. Nature 382:127-132 (1996).  PubMed
Canfield, D.E., and B. Thamdrup: Fate of elemental sulfur in an intertidal sediment. FEMS Microbiol. Ecol. 19:95-103 (1996).  ScienceDirect  Full Text
Canfield, D.E., T.W. Lyons and R. Raiswell: A model for iron deposition to euxinic Black Sea sediments. Am. J. Sci. 296:818-834 (1996).  AJS  
Ferdelman, T.G., C. Lee, S. Pantoja, J. Harder, B.M. Bebout, and H. Fossing: Sulfate reduction and methanogenesis in a Thioploca-dominated sediment off the coast of   Chile. Geochim. Cosmochim. Acta 61(15):3065-3079 (1996).  ScienceDirect 
Forster, S.: Spatial and temporal distribution of oxidation events occuring below the sediment water interface. Marine Ecol. 17:309-319 (1996).  Wiley  Full Text
Forster, S., M. Huettel and W. Ziebis: Impact of boundary layer flow velocity on oxygen utilization in coastal sediments. Mar. Ecol. Prog. Ser. 143:173-185 (1996).  Full Text
Gust, G., W. Bowles, S. Giordano and M. Huettel: Particle accumulation in a cylindrical sediment trap under laminar and turbulent steady flow. Aquatic Sciences 58(4):297-326 (1997).  Springer
Habicht, K.S. and D.E. Canfield: Sulphur isotope fractionation in modern microbial mats and the evolution of the sulphur cycle. Nature 382:342-343 (1996).  ResearchGate
Habicht, K.S. and D.E. Canfield: Sulfur fractionation by natural populations of sulfate reducing bacteria. In: Fourth international symposium on the geochemistry of the Earth surface. pp.59-63,  S.H. Bottrell (ed.), International Association of Geochemistry and Cosmochemistry (1996).  PubMed 
Huettel, M., S. Forster, S. Klöser and H. Fossing: Vertical Migration in the Sediment-Dwelling Sulfur Bacteria Thioploca spp. in Overcoming Diffusion Limitations. Appl. Environ. Microbiol. 62(6):1863-1872 (1996).  PubMed  Full Text
Huettel, M., W. Ziebis and S. Forster: Flow induced uptake of particulate matter in permeable sediments. Limnol. Oceanogr. 41(2):309-322 (1996).  ResearchGate  Full Text
Isaksen, M.F. and B.B. Jørgensen: Adaptation of psychrophilic and psychrotrophic sulfate-reducing bacteria to permanently cold environments. Appl. Environ. Microbiol. 62(2):408-414 (1996).  PubMed  Full Text
Jørgensen, B.B.: Chapter 6. Material flux in the sediment. pp.115-135, In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, Vol. 52, B.B. Jørgensen & K. Richardson (eds.), , American Geophysical Union (1996).  Wiley
Jørgensen, B.B.: Chapter 7. Case study – Aarhus Bay. pp.137-154, In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, Vol. 52, B.B. Jørgensen & K. Richardson (eds.), American Geophysical Union (1996).  Wiley 
Jørgensen, B.B. and K. Richardson: Chapter 1. Eutrophication: definition, history and effects. pp.1-19, In: Eutrophication in coastal marine ecosystems, Coastal and estuarine studies, Vol. 52, B.B. Jørgensen & K. Richardson (eds.), American Geophysical Union (1996).  Wiley  Full Text
Knoll, A.H., R.J. Bambach, D.E. Canfield and J.P. Grotzinger: Comparative Earth history and late Permian mass extinction. Science 273(5274): 452-457 (1996).  Science 
Raiswell, R. and D.E. Canfield: Rates of reaction between silicate iron and dissolved sulfide in Peru margin sediments. Geochim. Cosmochim. Acta. 60(15):2777-2787 (1996).  ScienceDirect 
Reimers, C.E., K.C. Ruttenburg, D.E. Canfield, M.B. Christiansen and J.B. Martin: Porewater pH and authigenic phases formed in the uppermost sediments of the Santa Barbara Basin. Geochim. Cosmochim. Acta. 60(21):4037-4057 (1996).  ScienceDirect
Schulz, H.N., B.B. Jørgensen, H. Fossing, and N.B. Ramsing: Community structure of filamentous, sheath-building sulfur bacteria, Thioploca spp., off the coast of Chile. Appl. Environ. Microbiol. 62(6):1855-1862 (1996).  PubMed  Full Text
Thamdrup, B., D.E. Canfield, T.G. Ferdelman, R.N. Glud and J.K. Gundersen: A biogeochemical survey of the anoxic basin Golfo Dulce, Costa Rica. Rev. Biol. Trop. 44 (Suppl. 3):19-33 (1996).  OTS  Full Text
Thamdrup, B. and D.E. Canfield: Pathways of carbon oxidation in continental margin sediments off central Chile. Limnol. Oceanogr. 41(8):1629-1650 (1996).  PubMed  Full Text
Ziebis, W., S. Forster, M. Huettel and B. B. Jørgensen: Complex burrows of the mud shrimp Callianassa truncata and their geochemical impact in the sea-bed. Nature 382:619-622 (1996).  Nature
Ziebis, W., M. Huettel, S. Forster: Impact of biogenic sediment topography on oxygen fluxes in permeable seabeds. - Mar. Ecol. Prog. Ser. 140:227-237 (1996).  ResearchGate 

Microsensor Group

Björn, L. O. , A. Cunningham., Z. Dubinsky, M. Estrada, F.L. Figueroa, F. García-Pichel, D.P. Häder, D. Hanelt, G. Levavasseur and K. Lüning: Technical discussion I - underwater light measurement and light absorption by algae. Sci. Mar. 60(Suppl.1):293- 297 (1996).  Lund  Full Text
Brune, A. and M. Kühl: pH profiles of the extremely alkaline hindguts of soil-feeding termites (Isoptera: Termitidae) determined with microelectrodes. J. Insect Physiol. 42(11-12):1121-1127 (1996).  ScienceDirect 
Camacho, A., F. Garcia-Pichel, E. Vicente and R.W. Castenholz: Adaptation to sulfide and to the underwater light field in three cyanobacterial isolates from Lake Arcas (Spain). FEMS Microbiol. Ecol. 21:293-301 (1996).  ScienceDirect  Full Text
de Beer, D., P. Stoodley and Z. Lewandowski: Measurement of local diffusion coefficients in biofilms by microinjection and confocal microscopy. Biotechnol. Bioeng. 53:151-158 (1996).  PubMed
de Beer, D., V. O′Flaharty, J. Thaveesri, P. Lens and W. Verstraete: Distribution of extracellular polysaccharides and flotation of anaerobic sludge. Appl. Microbiol. Biotechnol. 46:197-201 (1996).  Springer
de Beer, D., A. Glud, E. Epping and M. Kühl: A fast responding CO2 microelectrode for profiling sediments, microbial mats, and biofilms. Limnol. Oceanogr. 42(7):1590-1600. (1996). Full Text
de Beer, D., A. Schramm, C.M. Santegoeds and M. Kühl: A nitrite microsensor for profiling environmental biofilms. Appl. Environ. Microbiol., 63(3):973–977 (1996).  PubMed  Full Text
Epping, E. H. G. and B.B. Jørgensen: Light-enhanced oxygen respiration in benthic phototrophic communities. Mar. Ecol. Progr. Ser. 139:193-203 (1996).  MEPS  Full Text
Fukshansky-Kazarinova, N., L. Fukshansky, M. Kühl and B.B. Jørgensen: Theory of equidistant three-dimensional radiance measurements with optical microprobes. Applied Optics 35(1): 65-73 (1996).  PubMed  Full Text
Fukshansky-Kazarinova, N., L. Fukshansky, M. Kühl and B.B. Jørgensen: General theory of three-dimensional radiance measurements with optical microprobes. Applied Optics 36(25): 6520-6528 (1996).  PubMed  Full Text
Garcia-Pichel, F.: The absorption of ultraviolet radiation by microalgae: simple optics and photobiological implications. Sci. Mar. 60(Suppl.1):73-79 (1996).  CSIC  Full Text
Garcia-Pichel, F. and B.M. Bebout: Penetration of ultraviolet radiation into shallow water sediments: high exposure for photosynthetic communities. Mar. Ecol. Progr. Ser. 131:257-262 (1996). Full Text
Garcia-Pichel, F. and J. Belnap: Microenvironments and microscale productivity of cyanobacterial desert crusts. J. Phycol. 32:774-782 (1996).  Wiley
Garcia-Pichel, F., L. Prufert-Bebout and G. Muyzer: Phenotypic and phylogenetic analyses show Microcoleus chthonoplastes to a cosmopolitan cyanobacterium. Appl. Environ. Microbiol. 62(9):3284-3291 (1996).  PubMed  Full Text
Glud, R.N, N.B. Ramsing, J.K. Gundersen and I. Klimant: Planar optrodes: A new tool for fine scale measurements of two-dimensional O2 distribution in benthic communities. Mar. Ecol. Prog. Ser. 140:217-226 (1996). Full Text
Glud, R.N, S. Forster and M. Huettel: Influence of radial pressure gradients on solute exchange in stirred benthic chambers. Mar. Ecol. Prog. Ser. 141:303-311 (1996).  ResearchGate
Hartmann, P., W. Ziegler, G. Holst and D.W. Lübbers: Oxygen flux fluorescence lifetime imaging. Sensors and actuators B 38-39:110-115 (1996).  ScienceDirect 
Holby, O. and L.G. Anderson: Geochemistry in an area recently uncovered from the Filchner Ice Shelf. Cont. Shelf Res. 16(11):1479-1488 (1996).  ScienceDirect 
Holby, O. and S. Evans: The vertical distribution of Chernobyl-derived radionuclides in a Baltic Sea sediment. J. Environ. Radioactivity 33(2):129-145 (1996).  ScienceDirect 
Jeroschewski, P., C. Steuckart and M. Kühl: An amperometric microsensor for the determination of H2S in aquatic environments. Anal. Chem. 68:4351-4357 (1996).  ACS 
Karsten, U.: Growth and organic osmolytes of geographically different isolates of Microcoleus chthonoplastes (Cyanobacteria) from benthic microbial mats: Response to salinity change. J. Phycol. 32:501-506 (1996).  Wiley
Karsten, U., and F. Garcia-Pichel: Carotenoids and mycosporine-like amino acid compounds in members of the genus Microcoleus (Cyanobacteria): a chemosystematic study. Syst. Appl. Microbiol. 19:285-294 (1996).  ScienceDirect  
Karsten, U. and M. Kühl: Die Mikrobenmatte: das kleinste ökosystem der Welt. Biologie in unserer Zeit 26(1):16-26 (1996).  Wiley
Karsten, U., I. Klimant and G. Holst: A new in vivo fluorometric technique to measure growth of adhering phototrophic microorganisms. Appl. Environ. Microbiol. 62(1):237-243 (1996).  PubMed  Full Text
Karsten, U., K. Kück, C. Vogt, and G.O. Kirst: Chapter 13. Dimethylsulfoniopropionate production in phototrophic organisms and its physiological function as a cryoprotectant. In: Biological and environmental chemistry of DMSP and related sulfonium compounds. pp.143-153, R.P. Kiene, P.T. Visscher, M.D. Keller, G.O. Kirst (eds.), Plenum Press, New York (1996).  Springer  
Klimant, I., G. Holst and M. Kühl: A simple fiberoptic sensor to detect the penetration of microsensors into sediments and other biogeochemical systems. Limnol. Oceanogr. 42(7):1638-1643 (1996). Full Text
Kohls, O., I. Klimant, G. Holst and M. Kühl: Thionine as an indicator for use as a hydrogen sulfide optode. Proc. SPIE 2836:311-321 (1996).  SPIE 
Kühl, M., R.N. Glud, H. Ploug and N.B. Ramsing: Microenvironmental control of photosynthesis and photosynthesis-coupled respiration in an epilithic cyanobacterial biofilm. J. Phycol. 32:799-812 (1996).  Wiley
Landen, A., O. Holby and P.O.J. Hall: Determination of biogenic silica in marine sediments - selection of pretreatment method and effect of sample size. Vatten 52:85-92 (1996).  Springer 
Nielsen, L.P.N. and R.N. Glud: Denitrification in a coastal sediment measured in situ by the nitrogen isotope pairing technique applied to a benthic flux chamber. Mar. Ecol. Progr. Ser.137:181-186 (1996).  ASM  Full Text
Schreiber, U., M. Kühl, I. Klimant and H. Reising: Measurement of chlorophyll fluorescence within leaves using a modified PAM fluorometer with a fiber-optic microprobe. Phot. Res. 47:103-109 (1996).  PubMed  Full Text
Diploma thesis
Rink, S.: Untersuchungen der Photosynthese- und Respirationsraten in der symbiontentragenden planktischen Foraminifere Orbulina universa mit Mikroelektroden. Diplomarbeit, Universität Bremen (1996).
Ph.D. thesis
Ploug, H.: Light and photosynthesis in dense populations of microalgae. Ph.D. Thesis, University of Aarhus, Denmark (1996).

Department of Microbiology

Harder, J.: Species-independent maintenance energy and natural population sizes. FEMS Microbiol. Ecol. 23:39-44 (1996).  ScienceDirect  Full Text
Harder, J. and C. Probian: Anaerobic mineralization of cholesterol by a novel type of denitrifying bacterium. Arch. Microbiol. 167:269-274 (1996).  Springer
Rabus, R. and F. Widdel: Utilization of alkylbenzenes during anaerobic growth of pure cultures of denitrifying bacteria on crude oil. Appl. Environ. Microbiol. 62(4):1238-1241 (1996).  PubMed  Full Text
Rabus, R., M. Fukui, H. Wilkes and F. Widdel: Degradative capacities and 16S rRNA-targeted whole-cell hybridization of sulfate-reducing bacteria in an anaerobic enrichment culture utilizing alkylbenzenes from crude oil. Appl. Environ. Microbiol. 62(10):3605-3613 (1996).  ASM  Full Text
Straub, K., M. Benz, B. Schink and F. Widdel: Anaerobic, nitrate-dependent microbial oxidation of ferrous iron. Appl. Environ. Microbiol. 62(4):1458-1460 (1996).  PubMed 
Zengler, K.: Anaerobe Oxidation von Xylolen, anderen Alkylbenzolen und Erdöl. Diplomarbeit, Universität Göttingen (1996).
Ph.D. thesis
Ehrenreich, P.: Anaerobes Wachstum neuartiger sulfatreduzierender und nitratreduzierender Bakterien auf n-Alkanen und Erdöl. Dissertation, Universität Bremen. Shaker Verlag, Aachen (1996), 174pp.

Molecular Ecology Group

Beveridge, T. J. , P. H. Pouwels, M. Saèra, A. Kotiranta,.K. Lounatmaa, K. Kari, E. Kerosuo, M. Haapasalo, E. M. Egelseer, I. Schocher, U. B. Sleytr, L. Morelli, M.-L. Callegari, J. F. Nomellini, W. H. Bingle, J. Smit, E. Leibovitz, M. Lemaire, I. Miras, S. Salamitou, P. Beèguin, H. Ohayon, P. Gounon, M. Matuschek, K. Sahm, H. Bahl, R. Grogono-Thomas, J. Dworkin, M. J. Blaser, R. M. Woodland, D. G. Newell, M. Kessel, S. F. Koval: V. Functions of S-layers. FEMS Microbiol. Rev 20:99-149 (1996).  PubMed  Full Text
Donner, G., K. Schwarz, H.G. Hoppe and G. Muyzer: Profiling the succession of bacterial populations in pelagic chemoclines. Arch. Hydrobiol. Spec. Issues Advanc. Limnol. 48, 7-14 (1996).  ResearchGate
Ferris, M.J., G. Muyzer and D.M. Ward: Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 62(2):340-346 (1996).  PubMed  Full Text
Isaksen, M.F. and A. Teske: Desulforhopalus vacuolatus gen. nov., sp. nov., a new moderately psychrophilic sulfate-reducing bacterium with gas vacuoles isolated from a temperate estuary. Arch. Microbiol. 166, 160-168 (1996).  Springer 
Jetten, M.S.M., S. Logemann, G. Muyzer, L.A. Robertson, S. de Vries, M.C.M. van Loosdrecht and J.G. Kuenen: Novel principles in the microbial conversion of nitrogen compounds. Antonie van Leeuwenhoek 71, 75-93 (1996).  Springer 
Krekeler, D., P. Sigalevich, A. Teske, H. Cypionka, and Y. Cohen: A sulfate-reducing bacterium from the oxic layer of a microbial mat from Solar Lake (Sinai), Desulfovibrio oxyclinae sp. nov. Arch. Microbiol,167 : 369–375 (1996).  Springer  
Kuever, J., C. Wawer and R. Lillebaek: Microbiological observations in the anoxic basin Golfo Dulce, Costa Rica. Rev. Biol. Trop., 44 Suppl. 3: 49-57 (1996).  PubMed  Full Text
Matuschek, M., K. Sahm, A. Zibat and H. Bahl: Characterization of genes from Thermoanaerobacterium thermosulfurigenes EM1 that encode two glycosyl hydrolases with conserved S-layer-like domains. Mol. Gen. Genet. 252:493-496 (1996).  PubMed
Muyzer, G., S. Hottenträger, A. Teske and C. Wawer: Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Molecular Microbial Ecology Manual 3.4.4. pp.1-23, A.D.L. Akkermans, J.D. van Elsas, F.J. de Bruijn (eds.), Kluwer Academic Publishers, Dordrecht, The Netherlands (1996).  NCBI  Full Text
Muyzer, G. and K. Smalla: Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie van Leeuwenhoek, 73:127-141 (1996).  PubMed Full Text
Ramsing, N.B., H. Fossing, T.G. Ferdelman, F. Andersen and B. Thamdrup: Distribution of bacterial populations in a stratified fjord (Mariager Fjord, Denmark) quantified by in situ hybridization and related to chemical gradients in the water column. Appl. Environ. Microbiol. 62(4):1391-1404 (1996).  PubMed  Full Text
Sahm, K., M. Matuschek, H. Müller, W. J. Mitchell and H. Bahl: Molecular analysis of the amy gene locus of Thermoanaerobacterium thermosulfurigenes EM1 encoding starch degrading enzymes and a binding protein-dependent maltose transport system. J. Bacteriol. 178(4):1039-1046 (1996).  PubMed  Full Text
Schramm, A., L.H. Larsen, N.P. Revsbech, N.B. Ramsing, R. Amann and K.-H. Schleifer: Structure and function of a nitrifying biofilm as determined by in situ hybridization and the use of microelectrodes. Appl. Envrinom. Microbiol. 62(12):4641-4647 (1996).  PubMed  Full Text
Teske, A., P. Sigalevich, Y. Cohen and G. Muyzer: Molecular identification of bacteria from a coculture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments as a tool for isolation in pure cultures. Appl. Environ. Microbiol. 62(11):4210-4215 (1996).  PubMed  Full Text
Teske, A., C. Wawer, G. Muyzer and N.B. Ramsing: Distribution of sulfate-reducing bacteria in a stratified Fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62(4):1405-1415 (1996).  PubMed  Full Text
Ph.D. thesis
Wawer, C.: Molekularbiologische Charakterisierung von sulfatreduzierenden Bakterien in Umweltproben unter den Aspekten Diversität und Aktivität. Berichte aus der Biologie,  Shaker Verlag, Aachen 1997, zugleich Dissertation, Universität Bremen, Bremen (1996), 208pp.
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