Publikationen 2000

Publikationen 2000

Department of Biogeochemistry

Arnosti, C.: Substrate specificity in polysaccharide hydrolysis: Contrasts between bottom water and sediments. Limnology and Oceanography 45(5):1112-1119 (2000).  ASLO  Full Text
Boetius, A. and K. Lochte: Regional variation of total microbial biomass in sediments of the deep Arabian Sea. Deep-Sea Research II 47:149-168 (2000).  ScienceDirect
Boetius, A., T. Ferdelman and K. Lochte: Bacterial activity in sediments of the deep Arabian Sea in relation to vertical flux. Deep Sea Research II 47:2835-2875 (2000).  ScienceDirect
Boetius, A., B. Springer and C. Petry: Microbial activity and particulate matter in the benthic nepheloid layer (BNL) of the deep Arabian Sea. Deep Sea Research II 47:2687-2706 (2000).  ScienceDirect
Boetius, A., K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B. B. Jorgensen, U. Witte and O. Pfannkuche: A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature 407:623-626 (2000).  PubMed
Böttcher, M. E.: Stable isotope fractionation during experimental formation of Norsethite (BaMg[CO3]2): A mineral analogue of Dolomite. Aquatic Geochemistry 6:201-212 (2000).  Springer
Böttcher, M. E. and A. Lepland: Biogeochemistry of sulfur in a sediment core from the west-central Baltic Sea: Evidence from stable isotopes and pyrite textures. Journal of Marine Systems 25:299-312 (2000).  ScienceDirect
Böttcher, M. E., H. Schale, B. Schnetger, K. Wallmann and H.-J. Brumsack: Stable sulfur isotopes indicate net sulfate reduction in near-surface sediments of the deep Arabian Sea. Deep-Sea Research II 47:2769-2783 (2000).  ScienceDirect
Böttcher, M. E., B. Hespenheide, E. Llobet-Brossa, C. Beardsley, O. Larsen, A. Schramm, A. Wieland, G. Böttcher, U.-G. Berninger and R. Amann: The biogeochemistry, stable isotope geochemistry and microbial community structure of a temperate intertidal mudflat: An integrated study. Continental Shelf Research 20:1749-1769 (2000).  ScienceDirect
Boudreau, B. P. and B. B. Jørgensen : The Benthic Boundary Layer: Transport Processes and Biogeochemistry. Oxford University Press (2000), 415pp.  Wiley
Boudreau, B. P. and B. B. Jørgensen: Chapter 9. Diagenesis and sediment-water exchange. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.211-244, B. P. Boudreau & B. B. Jørgensen (eds.), Oxford University Press (2000). Full Text
Brüchert, V., M. E. Pérez and C. B. Lange: Coupled primary production, benthic foraminiferal assemblage, and sulfur diagenesis in organic-rich sediments of the Benguela upwelling system. Marine Geology. 163:27-40 (2000).  ScienceDirect
Christiansen, B. and A. Boetius: Mass sedimentation of the swimming crab Charybdis smithii (Crustacea: Decapoda) in the deep Arabian Sea. Deep Sea Research II 47:2673-2685 (2000).  ScienceDirect
Elberling, B., A. Schippers and W. Sand: Bacterial and chemical oxidation of pyritic mine tailings at low temperatures. Journal of Contaminant Hydrology 41:225-238 (2000).  ScienceDirect
Fossing, H., T. G. Ferdelman and P. Berg: Sulfate reduction and methane oxidation in continental margin sediments influenced by irrigation (South-East Atlantic off Namibia). Geochimica et Cosmochimica Acta 64(5):897-910 (2000).  ScienceDirect
Hansen, J. W., B. Thamdrup and B. B. Jørgensen: Anoxic incubation of sediment in gas-tight plastic bags: A method for biogeochemical process studies. Marine Ecology Progress Series 208:273-282 (2000).  MEPS  Full Text
Jørgensen, B. B.: 5. Bacteria and marine biogeochemistry. pp.173-207, In: Marine Geochemistry. H. D. Schulz & M. Zabel (eds.), Springer, Berlin (2000).  Springer
Jørgensen, B. B.: Chapter 14. Life in the diffusive boundary layer. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.348-373, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text
Kasten, S. and B. B. Jørgensen: 8. Sulfate reduction in marine sediments. pp. 263-281, In: Marine Geochemistry. H. D. Schulz & M. Zabel (eds.). Springer, Berlin (2000).  Springer
Larsen, O. and C. B. Koch: Application of 57Fe-enriched synthetic ferrihydrite to speciate the product of bacterial reduction. Hyperfine Interactions 126:225-234 (2000).  Springer
Lochte, K., A. Boetius and C. Petry: Microbial food webs under severe nutrient limitations: life in the deep sea. In: Microbial Biosystems: New Frontiers. Proceedings of the 8th International Symposium on Microbial Ecology. Atlantic Canada Society for Microbial Ecology. pp.95-102, C. R. Bell, M. Brylinsky & P. Johnson-Green (eds.). Halifax/Canada (2000). Full Text
Oldenburg, T. B. P., J. Rullkötter, M. E. Böttcher and A. Nissenbaum: Molecular and isotopic characterization of organic matter in recent and sub-recent sediments from the Dead Sea. Organic Geochemistry 31:251-265 (2000).  ScienceDirect
Oldenburg, T. B. P., J. Rullkötter, M. E. Böttcher and A. Nissenbaum: Addendum to "Molecular and isotopic characterization of organic matter in recent and sub-recent sediments from the Dead Sea."[Organic Geochemistry 31:251-265 (2000)] Organic Geochemistry 31:773-774 (2000).  ResearchGate
Schippers, A., P.-G. Jozsa and W. Sand: Microbiological pyrite oxidation in a mine tailings heap and its relevance to the death of vegetation. Geomicrobiology Journal 17:151-162 (2000).  TFO
Schubert, C. J. and B. Nielsen: Effects of decarbonation treatments on δ13C values in marine sediments. Marine Chemistry 72:55-59 (2000).  ScienceDirect
Schubert, C. J., T. Ferdelman and B. Strotmann: Organic matter composition and sulfate reduction rates in sediments off Chile. Organic Geochemistry 31:351-361 (2000).  ScienceDirect
Schulz, H. N. and D. Riechmann: Thiomargarita namibiensis: Ein Gigant mit langem Atem. BioSpektrum 6:116-117 (2000). Full Text
Schulz, H. N., B. Strotmann, V. A. Gallardo and B. B. Jørgensen: Population study of the filamentous sulfur bacteria Thioploca spp. off the Bay of Concepcion, Chile. Marine Ecology Progress Series 200:117-126 (2000).  MEPS  Full Text
Thamdrup, B., R. Rosselló-Mora and R. Amann: Microbial manganese and sulfate reduction in Black Sea shelf sediments. Applied and Environmental Microbiology 66(7):2888-2897(2000).  NCBI  Full Text
Diploma theses
Riechmann, D.: Nitratspeichernde Schwefelbakterien und ihre Bedeutung in den Auftriebsgebieten vor der Küste Chiles und Namibias. Göttingen (2000).
Scheuner, M.: Erfassung des qualitativen und quantitativen Abbaus von organischen Substanzen unter verschiedenen Redoxbedingungen. Bremen (2000).
Ph.D. theses
Zopfi, J.: Sulfide oxidation and speciation of sulfur intermediates in marine environments. Dissertation Universität Bremen, Bremen  (2000), 135pp.

Flux Group

Chakraborty, B. B., D. Khattar and A. Khalili: Effect of rotation on stability of suspended sediments. Physics of Fluids 12(11):3074-3077 (2000).  AIP
Dando, P. R., S. Aliani, H. Arab, C. N. Bianchi, M. Brehmer, S. Cocito, S. W. Fowler, J. Gundersen, L. E. Hooper, R. Kölbl, J. Kuever, P. Linke, K. C. Makropoulos, R. Meloni, J. C. Miquel, C. Morri, S. Müller, C. Robinson, H. Schlesner, S. Sievert, R. Stöhr, D. Stüben, M. Thomm, S. P. Varnavas and W. Ziebis: Hydrothermal studies in the Aegean Sea. Physics & Chemistry of the Earth Part B-Hydrology Oceans & Atmosphere 25(1):1-8 (2000).  ScienceDirect
Huettel, M. and A. Rusch: Transport and degradation of phytoplankton in permeable sediment. Limnology and Oceanography 45(3):534-549 (2000).  ASLO  Full Text
Huettel, M. and I.T. Webster: Chapter 7. Porewater flow in permeable sediment. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp.144-179, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text
Janßen, F., T. Treude and U. Witte: Scavenger assemblages under differing trophic conditions: a case study in the deep Arabian sea. Deep-Sea Research II 47:2999-3026 (2000).  ScienceDirect
Khalili, A., A. J. Basu and J. Mathew: Eine neue implizierte Methode zur Berechnung von instationären und inkompressiblen Störungen. GWDG-Bericht Nr. 54:71-80 (2000).
Khalili, A., M. Huettel and W. Merzkirch: Chapter 3. Fine-scale flow measurements in the benthic boundary layer. In: The Benthic Boundary Layer: Transport Processes and Biogeochemistry. pp. 44-77, B. P. Boudreau & B. B. Jørgensen (eds.). Oxford University Press (2000). Full Text
Rusch, A. and M. Huettel: Advective particle transport into permeable sediments - evidence from experiments in an intertidal sandflat. Limnology and Oceanography 45(3):525-533 (2000).  ASLO  Full Text
Turnewitsch, R., U. Witte and G. Graf: Bioturbation in the abyssal Arabian Sea: influence of fauna and food supply. Deep-Sea Research II 47:2877-2911 (2000).  ScienceDirect
Wenzhöfer, F., O. Holby, R. N. Glud, H. K. Nielsen and J. Gundersen: In situ microsensor studies of a shallow water hydrothermal vent at Milos, Greece. Marine Chemistry 69:43-54 (2000).  ScienceDirect
Witte, U.: Vertical distribution of metazoan macrofauna within the sediment at four sites with contrasting food supply in the deep Arabian Sea. Deep-Sea Research II 47:2979-2997 (2000).  ScienceDirect
Witte, U. and O. Pfannkuche: High rates of benthic carbon remineralisation in the abyssal Arabian Sea. Deep-Sea Research II 47:2785-2804 (2000).  ScienceDirect
Diploma theses
Köbrich, M.: Einfluss mikrobieller exopolymerer Substanzen auf die Permeabilität mariner Sedimente. Bremen (2000).
Treude, T.: Community structure and metabolism of scavenging amphipods in the deep Arabian Sea. Kiel (2000).
Ph.D. theses
Rusch, A.: Dynamik der Feinfraktion im Oberflächenhorizont permeabler Schelfsedimente. Berichte aus dem Fachbereich Geowissenschaften der Universität Bremen Nr. 155, Dissertation Universität Bremen, Bremen (2000), 116pp.

Microsensor Group

de Beer, D. and M. Kühl: Interfacial microbial mats and biofilms. The benthic boundary layer, chapter 15, page 374 - 394. Full Text
de Beer, D., M. Kühl, N. Stambler and L. Vaki: A microsensor study of light enhanced Ca2+ uptake and photosynthesis in the reef-building hermatypic coral Favia sp. Marine Ecology Progress Series 194:75-85 (2000). Full Text
Edwards, H. G. M., F. Garcia-Pichel, E. M. Newton and D. D. Wynn-Williams: Vibrational Raman spectroscopic study of scytonemin, the UV-protective cyanobacterial pigment. Spectrochimica Acta Part A-Molecular Spectroscopy 56:193-200 (2000).  PubMed
Holst, G., I. Klimant, M. Kühl and O. Kohls: Optical microsensors and microprobes. In: Chemical sensors in Oceanography.pp.143-188, M. S. Varney (ed.). Amsterdam, OPA (2000).  PubMed
Köhler-Rink, S. and M. Kühl: Microsensor studies of photosynthesis and respiration in larger symbiontic foraminifera. I. The physico-chemical microenvironment of Marginopora vertebralis, Amphistegina lobifera and Amphisorus hemprichii. Marine Biology 137:473-486 (2000).  Springer
Liebsch, G., I. Klimant, B. Frank, G. Holst and O. S. Wolfbeis: Luminescence Lifetime Imaging of Oxygen, pH, and carbon dioxide distribution using optical sensors. Applied Spectroscopy 54(4):548-559 (2000).  OSA
Portwich, A. and F. Garcia-Pichel: A novel prokaryotic UVB photoreceptor in the cyanobacterium Chlorogloeopsis PCC 6912. Photochemistry & Photobiology 71:493-498 (2000).  PubMed
Wieland, A. and M. Kühl: Short-term temperature effects on oxygen and sulfide cycling in a hypersaline cyanobacterial mat (Solar Lake, Egypt). Marine Ecology Progress Series 196:87-102 (2000). Full Text
Wieland, A. and M. Kühl: Irradiance and temperature regulation of oxygenic photosynthesis and O2 consumption in a hypersaline cyanobacterial mat (Solar Lake, Egypt). Marine Biology 137:71-85 (2000).  Springer
Diploma theses
Zosgornik, H.: Interaktionen zwischen Cyanobakterien vom Stamm Aphanothece halophytica und aeroben heterotrophen Bakterien. Hochschule Anhalt (2000).
Ph.D. theses
Portwich, A.F.M.: Die Biosynthese wasserlöslicher, UV-Schutzsubstanzen (MAAs) und ihre Regulation in Cyanobakterien. Dissertation Universität Bremen, Bremen (2000), 106pp.

Department of Microbiology

Diploma theses
Amann, R., R. Rosselló-Mora and D. Schüler: Chapter 4. Phylogeny and in situ identification of magnetotactic bacteria. pp.47-60, In: Biomineralization of nano- and microstructures. E. Bäuerlein (ed.). Wiley-VCH, Weinheim (2000).  Wiley
Bazylinski, D. A., A.J. Dean, D. Schüler, E. J.P. Phillips and D. R. Lovley: N2-dependent growth and nitrogenase activity in the metal-metabolizing bacteria, Geobacter metallireducens and Magnetospirillum species. Environmental Microbiology 2(3):266-273 (2000).  PubMed
Ehrenreich, P., A. Behrends, J. Harder and F. Widdel: Anaerobic oxidation of alkanes by newly isolated denitrifying bacteria. Archives of Microbiology 173:58-64 (2000).  PubMed
Harder, J., U. Heyen, C. Probian and S. Foß: Anaerobic utilization of essential oils by denitrifying bacteria. Biodegradation 11:55-63 (2000).  PubMed
Heyen, U. and J. Harder: Geranic acid formation, an initial reaction of anaerobic monoterpene metabolism in denitrifying Alcaligenes defragrans. Applied and Environmental Microbiology 66(7):3004-3009 (2000).  PubMed  Full Text
Schüler, D.: Die Biomineralisation von magnetischen Nanokristallen in magnetotaktischen Bakterien. BioSpektrum 6:445-449 (2000). Full Text
Schüler, D.: Chapter 8. Characterization of the magnetosome membrane in Magnetospirillum gryphiswaldense. In: Biomineralization of nano- and microstructures. pp.109-118,  E. Bäuerlein (ed.), Wiley-VCH, Weinheim (2000).
Sievert, S. M., T. Heidorn and J. Kuever: Halothiobacillus kellyi sp. nov., a mesophilic obligately chemolithoautotrophic, sulfur-oxidizing bacterium isolated from a shallow-water hydrothermal vent in the Aegean Sea and emended description of the genus Halothiobacillus. International Journal of Systematic and Evolutionary Microbiology 50:1229-1237 (2000).  PubMed  Full Text
Sievert, S. M. and J. Kuever: Desulfacinum hydrothermale sp. nov., a thermophilic, sulfate-reducing bacterium from geothermally heated sediments near Milos Island (Greece). International Journal of Systematic and Evolutionary Bacteriology 50:1239-1246 (2000).  PubMed  Full Text
Sievert, S., J. Kuever and G. Muyzer: Identification of 16S ribosomal DNA-defined bacterial populations at a shallow submarine hydrothermal vent near Milos island (Greece). Applied and Environmental Microbiology 66(7):3102-3109 (2000).  PubMed  Full Text
Sievert, S., W. Ziebis, J. Kuever and K. Sahm: Relative abundance of Archaea and Bacteria along a thermal gradient of a shallow-water hydrothermal vent quantified by rRNA slot-blot hybridization. Microbiology 146, 1287-1293 (2000).  PubMed  Full Text
Surkov, A. V., M. E. Böttcher and J. Kuever: Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis. Archives of Microbiology 174:448-451 (2000).  PubMed
Wilkes H., C. Boreham, G. Harms, K. Zengler and R. Rabus: Anaerobic degradation and carbon isotopic fractionation of alkylbenzenes in crude oil by sulphate-reducing bacteria. Organic Geochemistry 31:101-115 (2000).  ScienceDirect
Grünberg, K.: Untersuchungen zur mikroaeroben Kultivierung von M. gryphiswaldense sowie zur biochemischen Charakterisierung der Magnetosomenmembran. Bremen (2000).
Meinke, R.: Physiologische Untersuchungen zur Kälteanpassung bei chemolithoautotrophen schwefeloxidierenden Bakterien aus marinen Sedimenten. Bremen (2000).
Timke, M.: Initiale Reaktionen des Monoterpenstoffwechsels von Alcaligenes defragans. Bremen  (2000).

Molecular Ecology Group

Amann, R.: Who is out there? Microbial aspects of biodiversity. Systematic and Applied Microbiology 23:1-8 (2000).  PubMed
Amann, R.: Methoden zur Bestimmung der in situ-Funktion von Mikroorganismen. BioSpektrum 6:274-276 (2000). Full Text
Amann, R.: Methodological Aspects of fluorescence in situ hybridization. Bioscience Microflora 19(2):85-91 (2000). Full Text
Amann, R. and W. Ludwig: Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. FEMS Microbiology Reviews 24:555-565 (2000).  PubMed  Full Text
Amann, R., R. Rosselló-Mora, C. Flies and D. Schüler: Chapter 3. Phylogeny and in situ identification of magnetotactic bacteria. pp.47-60, In: Biomineralisation. 2nd edition., E. Bäuerlein (ed.), Wiley-VCH, Weinheim (2000).  Wiley
Antón, J., R. Rosselló-Mora, F. Rodrí­guez-Valera and R. Amann: Extremely halophilic Bacteria in crystallizer ponds from solar salterns. Applied and Environmental Microbiology 66(7):3052-3057 (2000).  PubMed  Full Text
Brand, B. C., R. I. Amann, M. Steinert, D. Grimm and J. Hacker: Identification and in situ detection of intracellular bacteria in the environment. pp.601-624, In: Subcellular Biochemistry, Volume 33: Bacterial invasion into eukaryotic cells. T. A. Oelschlaeger and J. Hacker (eds.). Kluwer/Plenum, New York/USA (2000).  PubMed
Casamayor, E. O., H. Schäfer, L. Baneras, C. Pedros-Alio, and G. Muyzer: Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Applied and Environmental Microbiology 66(2):499-508 (2000).  PubMed  Full Text
Eilers, H., J. Pernthaler and R. Amann: Succession of pelagic marine bacteria during enrichment: a close look at cultivation-induced shifts. Applied and Environmental Microbiology 66(1):4634-4640 (2000).  NCBI  Full Text
Eilers, H., J. Pernthaler, F. O. Glöckner and R. Amann: Culturability and in situ abundance of pelagic bacteria from the North Sea. Applied and Environmental Microbiology 66(7):3044-3051 (2000).  ASM  Full Text
Fuchs, B. M., F. O. Glöckner, J. Wulf and R. Amann: Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Applied and Environmental Microbiology 66(8):3603-3607 (2000).  PubMed  Full Text
Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill and R. Amann: Changes in community composition during dilution cultures of marine Bacterioplankton as assessed by flow cytometric and molecular biological techniques. Environmental Microbiology 2(2):191-201 (2000).  PubMed  
Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler and R. Amann: Comparative 16S rRNA analysis of lake Bacterioplankton reveals globally distributed phylogenetic clusters including an abundant group of Actinobacteria. Applied and Environmental Microbiology 66(11):5053-5065 (2000).  ASM  Full Text
Groben, R., G. J. Doucette, M. Kopp, M. Kodama, R. Amann and L. K. Medlin: 16S rRNA targeted probes for the identification of bacterial strains isolated from cultures of the toxic dinoflagellate Alexandrium tamarense. Microbial Ecology 39:186-196 (2000).  PubMed
Head, I.M., N. D. Gray, H. D. Babenzien and F. O. Glöckner: Uncultured giant bacteria of the genus Achromatium. FEMS Microbiology Ecology 33:171-180 (2000).  PubMed
Jurgens, G., F. O. Glöckner, R. Amann, A. Saano, L. Montonen, M. Likolammi and U. Münster: Identification of novel Archaea in Bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiology Ecology 34:45-56 (2000).  PubMed
Krieger, J., O. Giere and N. Dubilier: Localization of RubisCO and sulfur in endosymbiotic bacteria of the gutless marine oligochaete Inanidrilus leukodermatus (Annelida). Marine Biology 137:239-244 (2000).  Springer
Oerther, D. B., J. Pernthaler, A. Schramm, R. Amann and L. Raskin: Monitoring precursor 16S rRNAs of Acinetobacter spp. in activated sludge wastewater treatment systems. Applied and Environmental Microbiology 66(5):2154-2165 (2000).  PubMed  Full Text
Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jørgensen and R. Amann: Community structure, cellular rRNA content, and activity of sulfate-reducing bacteria in marine Arctic sediments. Applied and Environmental Microbiology 66(8):3592-3602 (2000).  PubMed  Full Text
Weller, R., F.O. Glöckner and R. Amann: 16S rRNA-targeted oligonucleotide probes for the in situ detection of members of the phylum Cytophaga-Flavobacterium-Bacteroides. Systematic and Applied Microbiology 23:107-114 (2000).  PubMed
Wickham, S., A. Gieseke and U.-G. Berninger: Benthic ciliate identification and enumeration: an improved methodology and its application. Aquatic Microbial Ecology 22:79-91 (2000).  AME  Full Text
Diploma theses
Behrens, S.: Untersuchung der differentiellen Genexpression von Desulfotalea psychrophila. Bremen (2000).
Kolb, S.: Abundanz und vertikale Verteilung von sulfatreduzierenden und chemolithotrophen schwefeloxidierenden Bakterien in sandigen Wattenmeersedimenten. Göttingen (2000).
Peplies, J.: Gerichtete Isolierung von Proteobakterien aus der Nordsee und deren in situ-Nachweis. Bremen (2000).
Prilipp, A.: Charakterisierung von Ektosymbionten mariner Nematoden der Gattung Leptonemella und freilebender schwefel-oxidierender Bakterien anhand mikrobiologischer und molekularbiologischer Methoden. Bremen  (2000).
Ph.D. theses
Eilers, H.: Pelagische Bakteriengesellschaften in der Nordsee. Kultivierung, Diversität und in situ Dynamik. Dissertation Universität Bremen, Bremen (2000), 94pp.
Llobet-Brossa, E.: Microbial community structure and dynamics of Wadden Sea sediments (Dangast). Dissertation Universität Bremen, Bremen (2000), 131pp.
Ravenschlag, K.: Molekularbiologische Analyse der Diversität und Struktur mikrobieller Lebensgemeinschaften in marinen, arktischen Sedimenten (Svalbard). Dissertation Universität Bremen, Bremen (2000), 136pp.
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