Publikationen 2001

Publikationen 2001

Department of Biogeochemistry

Bian, L., K.-U. Hinrichs, T. Xie, S. C. Brassell, N. Iversen, H. Fossing, B.B. Jørgensen and J. M. Hayes: Algal and archaeal polyisoprenoids in a recent marine sediment: Molecular isotopic evidence for anaerobic oxidation of methane. Geochemistry Geophysics Geosystems 2:1-22 (2001).  Wiley  Full Text
Böttcher, M. E: Sulfur isotope fractionation in the biogeochemical sulfur cycle of marine sediments. Isotopes in Environmental and Health Studies 37(2):97-99 (2001).  PubMed
Böttcher, M. E. and B. Thamdrup: Anaerobic sulfide oxidation and stable isotope fractionation associated with bacterial sulfur disproportionation in the presence of MnO2. Geochimica et Cosmochimica Acta 65(10):1573-1581 (2001).  ScienceDirect
Böttcher, M. E., B. Thamdrup and T. W. Vennemann: Oxygen and sulfur isotope fractionation during anaerobic bacterial disproportionation of elemental sulfur. Geochimica et Cosmochimica Acta 65(10):1601-1609 (2001).  ScienceDirect
Brüchert, V., C. Knoblauch and B. B. Jørgensen: Controls on stable sulfur isotope fractionation during bacterial sulfate reduction in Arctic sediments. Geochimica et Cosmochimica Acta 65(5):753-766 (2001).  ScienceDirect
Dubinin, A. V. and S. V. Strekopytov: Behavior of rare earth elements during leaching of the oceanic sediments. Geochemistry International 39(7):692-701 (2001).  Sebina
Elvert, M., J. Greinert, E. Suess and M. J. Whiticar: Carbon isotopes of biomarkers derived from methane-oxidizing microbes at Hydrate Ridge, Cascadia convergent margin. pp.115-129, In: Natural Gas Hydrates: Occurrence, Distribution, and Detection. American Geographical Union 124 (2001).  Wiley
Fones, G. R., W. Davison, O. Holby, B. B. Jørgensen and B. Thamdrup: High-resolution metal gradients measured by in situ DGT/DET deployment in Black Sea sediments using an autonomous benthic lander. Limnology and Oceanography 46(4):982-988 (2001). Full Text
Jørgensen, B. B.: Space for hydrogen. News and Views Nature 412, 286-289 (2001). Full Text
Jørgensen, B. B., U. Franke, G. Holst and H. Røy: Oxygen transport across the benthic boundary layer: from a 1-D to a 3-D view. ASLO Bulletin 10:21-25 (2001).
Jørgensen, B. B., A. Weber and J. Zopfi: Sulfate reduction and anaerobic methane oxidation in Black Sea sediments. Deep-Sea Research I 48, 2097-2120 (2001).  ScienceDirect
Larsen, O. and D. Postma: Kinetics of reductive bulk dissolution of lepidocrocite, ferihydrite, and goethite. Geochimica et Cosmochimica Acta 65(9):1367-1379 (2001).  ScienceDirect
Neretin, L., I. I. Volkov, M. E. Böttcher and V.A. Grinenko: A sulfur budget for the Black Sea anoxic zone. Deep-Sea Research I 48:2569-2593 (2001).  ScienceDirect
Sand, W., T. Gehrke, P.-G. Jozsa and A. Schippers: (Bio)chemistry of bacterial leaching - direct vs. indirect bioleaching. Hydrometallurgy 59:159-175 (2001).  ScienceDirect
Schippers, A. and B. B. Jørgensen: Oxidation of pyrite and iron sulfide by manganese dioxide in marine sediments. Geochimica et Cosmochimica Acta 65(6):915-922 (2001).  ScienceDirect
Schippers, A., P.-G. Jozsa and W. Sand: Microbiological pyrite oxidation in a mine tailings heap and its relevance to the death of vegetation. Geomicrobiology Journal 17:151-162 (2001).  TFO
Schippers, A., P.-G. Jozsa, Z. M. Kovacs, M. Jelea and W. Sand: Large-scale experiments for microbiological evaluation of measures for safeguarding sulfidic mine waste. Waste Management 21:139-146 (2001).  PubMed
Schubert, C. J. and S. E. Calvert: Nitrogen and carbon isotopic composition of marine and terrestrial organic matter in Arctic Ocean sediments: implications for nutrient utilization and organic matter composition. Deep Sea Research I 48:789-810 (2001).  ScienceDirect
Schubert, C. J., R. Stein and S. E. Calvert: Tracking nutrient and productivity variations over the last deglaciation in the Arctic Ocean. Paleoceanography 16(2):199-211 (2001).  Wiley  Full Text
Schulz, H. N. and B. B. Jørgensen: Big bacteria. Annual Review of Microbiology 55:105-137 (2001).  PubMed
Strekopytov, S. V. and A.V.Dubinin: On the geochemistry of the ferriginous concretions of the Barents Sea. Oceanology 41(3):367-374 (2001).  Zotero  Full Text
Surkov, A. V., M. E. Boettcher and J. Kuever: Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis. Archives of Microbiology 174:448-451 (2001).  PubMed
von Blanckenburg, F. and M. E. Böttcher: Abiotic stable iron isotope fractionation. European Journal of Mineralogy (Supplement) 13:193-194 (2001).
Weber, A., W. Riess, F. Wenzhoefer and B.B. Jørgensen: Sulfate reduction in Black Sea sediments: in situ and laboratory radiotracer measurements from the shelf to 2000 m depth. Deep-Sea Research I 48:2073-2096 (2001).  ScienceDirect
Wijsman, J. W. M., J. J. Middelburg, P. M. J.Hermann, M. E. Böttcher and C. H. R. Heip: Sulfur and iron speciation in surface sediments along the northwestern margin of the Black Sea. Marine Chemistry 75:261-278 (2001).  ScienceDirect
Wortmann, U. G., S. M. Bernasconi and M. E. Böttcher: Hypersulfidic deep biosphere indicates extreme sulfur isotope fractionation during single-step bacterial sulfate reduction. Geology 29(7):647-650 (2001).  Geology  Full Text
Zopfi, J., T. G. Ferdelman, B. B. Jørgensen, A. Teske and B. Thamdrup: Influence of water column dynamics on sulfide oxidation and other major biogeochemical processes in the chemocline of Mariager Fjord (Denmark). Marine Chemistry 74:29-51 (2001).  ScienceDirect
Zopfi, J., T. Kjaer, L. P. Nielsen and B. B. Jørgensen: Ecology of Thioploca spp. : Nitrate and sulfur storage in relation to chemical microgradients and influence of Thioploca spp. on the sedimentary nitrogen cycle. Applied and Environmental Microbiology 67(12):5530-5537 (2001).  Zotero  Full Text

Flux Group

Boudreau, B. P., M. Huettel , S. Forster, R. A. Jahnke, A. McLachlan, J. J. Middelburg, P. Nielsen, F. Sansone, G. Taghon, W. Van Raaphorst, I. Webster, J. M. Weslawski, P. Wiberg and B. Sundby: Permeable marine sediments: overturning an old paradigm. EOS 82(11):133-136 (2001).  Wiley  Full Text
Bühring, S. I. and B. Christiansen: Lipids in selected abyssal benthopelagic animals: links to the epipelagic zone? Progress in Oceanography 50:369-382 (2001).  ScienceDirect
Richter, C., M. Wunsch, M. Rasheed, I. Kötter and M. I. Badran: Endoscopic exploration of Red Sea coral reefs reveals dense populations of cavity-dwelling sponges. Nature 413:726-730 (2001).  PubMed
Rusch, A., S. Forster, and M. Huettel: Bacteria, diatoms and detritus in an intertidal sandflat subject to advective transport across the water-sediment interface. Biogeochemistry 55:1-27 (2001).  Springer

Microsensor Group

Abed, R. and F. Garcia-Pichel: Long-term compositional changes after transplant in a microbial mat cyanobacterial community revealed using a polyphasic approach. Environmental Microbiology 3(1):53-62 (2001).  PubMed
de Beer, D.: Chapter 10. Micro-Electrodes. pp.85-100, In: Immobilized cells.  R.H. Wijffels (ed.), Springer Lab Manual, Springer Verlag, Berlin, Heidelberg, New York (2001).
de Beer, D.: Chapter 12. Microsensor studies of oxygen, carbon and nitrogen cycles in lake sediments and microbial mats. pp.227-246, In: Environmental Electrochemistry: Analyses of Trace Element Biogeochemistry. M. Taillefert and T. F. Rozan (eds.), American Chemical Society Symposium Series Vol. 811, Washington DC (2001).  ResearchGate
de Beer, D. and A. J. W. Larkum: Photosynthesis and calcification in the calcifying algae Halimeda discoidea studied with microsensors. Plant, Cell & Environment 24: 1209-1217 (2001).  Wiley  Full Text
Glud, R. N., A. Tengberg, M. Kühl, P. O. J. Hall, I. Klimant and G. Holst: An in situ instrument for planar O2 optode measurements at benthic interfaces. Limnology and Oceanography 46(8):2073-2080 (2001).  ResearchGate  Full Text
Hanstein, S., D. de Beer and H. H. Felle: Miniaturized carbon dioxide sensor designed for measurements within plant leaves. Sensors & Actuators B 81:107-114 (2001).  ScienceDirect
Holst, G. and B. Grunwald: Luminescence Lifetime Imaging with Transparent Oxygen Optodes. Sensors & Actuators B 74:74-90 (2001).  ScienceDirect
Stief, P.: Formation of ecotoxicologically relevant nitrite concentrations within nitrate-exposed sediments. Verhandlungen Internationaler Vereine für Limnologie 27:3751-3755 (2001).
Stief, P.: Influence of sediment and pore-water composition on nitrite accumulation in a nitrate-perfused freshwater sediment. Water Research 35(12):2811-2818 (2001).  PubMed
Wieland, A., D. de Beer, L. R. Damgaard, M. Kuehl, D. van Dusschoten and H. van As: Fine-scale measurement of diffusivity in a microbial mat with nuclear magnetic resonance imaging. Limnology and Oceanography 46(2):248-259 (2001).  ASLO  Full Text
Ph.D. theses
Abed, R.: Variations of community composition of cyanobacterial mats in response to environmental disturbance with emphasis on the biodegradation of petroleum derivatives. Dissertation Universität Bremen, Bremen (2001), 150pp.
Grötzschel, S.: Physiological reactions of hypersaline cyanobacterial mats upon degradation of organic pollutants. Simmering Verlag, Lilienthal (2002), zugleich Dissertation Universität Bremen, Bremen (2001), 148pp.
Stehning, C.: Project study: Theoriegrundlagen, Aufbau und Vermessung eines volloptischen Lichtwellenleiter-Multiplexers (Theory, design and application of optical fiber multiplexers). University Bremen  (2001).

Department of Microbiology

Detmers, J., V. Brüchert, K. Habicht and J. Kuever: Diversity of sulfur isotope fractionations by sulfate-reducing prokaryotes. Applied and Environmental Microbiology 67(2):888-894 (2001).  PubMed  Full Text
Grünberg, K., C. Wawer, B.M. Tebo and D. Schüler: A large gene cluster encoding several magnetosome proteins is conserved in different species of magnetotactic bacteria. Applied and Environmental Microbiology 67(19):4573-4582 (2001).  PubMed  Full Text
Kniemeyer, O. and J. Heider: Ethylbenzene dehydrogenase, a novel hydrocarbon-oxidizing molybdenum/iron-sulfur/heme enzyme. Journal of Biological Chemistry 276(24):21381-21386 (2001).  PubMed  Full Text
Kniemeyer, O. and J. Heider: (S)-1-Phenylethanol dehydrogenase of Azoarcus sp. strain EbN1, an enzyme of anaerobic ethylbenzene catabolism. Archives of Microbiology 176:129-135 (2001).  PubMed
Kuever, J., M. Könneke, A. Galushko and O. Drzyzga: Reclassification of Desulfobacterium phenolicum as Desulfobacula phenolica comb. nov. and description of strain SaxT as Desulfotignum balticum gen. nov., sp. nov. International Journal of Systematic and Evolutionary Microbiology 51:171-177 (2001).  IJSEM  Full Text
Rabus, R., H. Wilkes, A. Behrends, A. Armstroff, T. Fischer, A.J. Pierik and F. Widdel.: Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: evidence for (1-methylpentyl)succinate as initial product and for involvement of an organic radical in n-hexane metabolism. Journal of Bacteriology 183(5):1707-1715 (2001).  NCBI  Full Text
Surkov, A.V., G.A. Dubinina, A.M. Lysenko, F.O. Glöckner and J. Kuever: Dethiosulfovibrio russensis sp. nov., Dethiosulfovibrio marinus sp. nov. and Dethiosulfovibrio acidaminovorans sp. nov., novel anaerobic, thiosulfate- and sulfur-reducing bacteria isolated from 'Thiodendron' sulfur mats in different saline environments. International Journal of Systematic and Evolutionary Microbiology 51:327-337 (2001).  PubMed  Full Text
Widdel, F. and R. Rabus: Anaerobic biodegradation of saturated and aromatic hydrcarbons. Current Opinion in Biotechnology 12:259-276 (2001).  PubMed
Diploma theses
Meyer, B.: Molekularer Nachweis der dissimilatorischen APS-Reduktase in am Schwefelkreislauf beteiligten Mikroorganismen. Universität Bremen  (2001).
Ph.D. theses
Detmers, J.: An aquifer in the deep subsurface – microbiology and sulfur isotope fractionation.  Dissertation Universität Bremen, Bremen (2001), 118pp.
Kniemeyer, O.: Neuartige Reaktionen beim anaeroben Abbau von Kohlenwasserstoffen - Verwertung von Ethylbenzol und kurzkettigen Alkanen. Dissertation Universität Bremen, Bremen (2001), 145pp.
Könneke, M.: Untersuchung der zellularen Fettsäuren von sulfatreduzierenden Bakterien aus kalten, marinen Sedimenten. Dissertation Universität Bremen, Bremen (2001), 132pp.

Molecular Ecology Group

Amann, R., B. M. Fuchs and S. Behrens: The identification of microorganisms by fluorescence in situ hybridisation. Current Opinion in Biotechnology 12:231-236 (2001).  PubMed
Dubilier, N., C. Mülders, T. Ferdelman, D. De Beer, A. Pernthaler, M. Klein, M. Wagner, C. Erséus, F. Thiermann, J. Krieger, O. Giere and R. Amann: Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm. Nature 411:298-302 (2001).  PubMed
Eilers, H., J. Pernthaler, J. Peplies, F. O. Glöckner, G. Gerdts and R. Amann: Isolation of novel pelagic bacteria from the German Bight and their seasonal contributions to surface picoplankton. Applied and Environmental Microbiology 67(11):5134-5142 (2001).  PubMed  Full Text
Fuchs, B. M., K. Syutsubo, W. Ludwig and R. Amann: In situ accessibility of Escherichia coli 23S rRNA to fluorescently labeled oligonucleotide probes. Applied and Environmental Microbiology 67(2):961-968 (2001).  PubMed  Full Text
Gieseke, A., U. Purkhold, M. Wagner, R. Amann and A. Schramm: Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Applied and Environmental Microbiology 67(3):1351-1362 (2001).  PubMed  Full Text
Kirchman, D. L., L. Yu, B. M. Fuchs and R. Amann: Structure of bacterial communities in aquatic systems as revealed by filter PCR. Aquatic Microbial Ecology 26:13-22 (2001).  ResearchGate
Nogales, B., E. R. B. Moore, E. Llobet-Brossa, R. Rosselló-Mora, R. Amann and K. N. Timmis: Combined use of 16S ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenyl-polluted soil. Applied and Environmental Microbiology 67(4):1874-1884 (2001).  PubMed  Full Text
Pernthaler, J., F. O. Glöckner, W. Schönhuber and R. Amann: Chapter 11. Fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. In: Methods in Microbiology (Vol. 30): Marine Microbiology. pp.207-226, J. Paul (ed.), Academic Press, San Diego, USA (2001).  NCBI  Full Text
Pernthaler, A., J. Pernthaler, H. Eilers and R. Amann: Growth patterns of two marine isolates: adaptations to substrate patchiness? Applied and Environmental Microbiology 67(9):4077-4083 (2001).  PubMed  Full Text
Pernthaler, J., T. Posch, K. Simek, J. Vrba, A. Pernthaler, F. O. Glöckner, U. Nübel, R. Psenner and R. Amann: Predator-specific enrichment of Actinobacteria from a cosmopolitan freshwater clade in mixed continuous culture. Applied and Environmental Microbiology 67(5):2145-2155 (2001).  PubMed  Full Text
Posch, T., M. Loferer-Krößbacher, G. Gao, A. Alfreider, J. Pernthaler and R. Psenner: Precision of bacterioplankton biomass determination: a comparison of two fluorescent dyes, and of allometric and linear volume-to-carbon conversion factors. Aquatic Microbial Ecology 25:55-63 (2001).  AME  Full Text
Ravenschlag, K., K. Sahm and R. Amann: Quantitative molecular analysis of the microbial community in marine Arctic sediments (Svalbard). Applied and Environmental Microbiology 67(1):387-395 (2001).  PubMed  Full Text
Rosselló-Mora, R. and R. Amann: Review. The species concept for prokaryotes. FEMS Microbiology Reviews 25:39-67 (2001).  Wiley  Full Text
Schönhuber, W., G. Le Bourhis, J. Tremblay, R. Amann and S. Kulakauskas: Utilization of tmRNA sequences for bacterial identification. BMC Microbiology 1:20 (2001).  PubMed  Full Text
Schramm, A., D. de Beer, A. Gieseke and R. Amann: Microenvironments and distribution of nitrifying bacteria in a membrane-bound biofilm. Environ. Microbiol. 2(6):680-686 (2001).  PubMed
Schweitzer, B., I. Huber, R. Amann, W. Ludwig and M. Simon: α- and β-Proteobacteria control the consumption and release of amino acids on lake snow aggregates. Applied and Environmental Microbiology 67(2):632-645 (2001).  PubMed  Full Text
Šimek, K., J. Pernthaler, M. G. Weinbauer, K. Hornák, J. R. Dolan, J. Nedoma, M. Maš­n and R. Amann: Changes in bacterial community composition and dynamics and viral mortality rates associated with enhanced flagellate grazing in a mesoeutrophic reservoir. Applied and Environmental Microbiology 67(6):2723-2733 (2001).  PubMed  Full Text
West, N. J., W. A. Schönhuber, N. J. Fuller, R. I. Amann, R. Rippka, A. F. Post and D. J. Scanlan: Closely related Prochlorococcus genotypes show remarkably different depth distributions in two oceanic regions as revealed by in situ hybridization using 16S rRNA-targeted oligonucleotides. Microbiology 147:1731-1744 (2001).  PubMed  Full Text
Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann and P. H. Burkill: Linking the composition of bacterioplankton to rapid turnover of dissolved dimethylsulphoniopropionate in an algal bloom in the North Sea. Environmental Microbiology 3(5):304-311 (2001).  PubMed  Full Text
Zubkov, M. V., B. M. Fuchs, P. H. Burkill and R. Amann: Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Applied and Environmental Microbiology 67(11):5210-5218 (2001).  SciFLO  Full Text
Diploma theses
Blazejak, A.: Molekularbiologische Charakterisierung der mit marinen Oligochaeten (Annelida) assoziierten Bakterien. Fachbereich Biotechnologie der Technischen Universität Berlin (2001).
Lemke, A.: Mikrobielle Diversität in gashydrathaltigen Sedimenten. Fachbereich Chemie (Studiengang Marine Umweltwissenschaften) der Universität Oldenburg (2001).
Ph.D. theses
Gieseke, A.: Microscale structure and activity of complex nitrifying wastewater biofilms. Dissertation Universität Bremen, Bremen (2001), 156pp.
Schäfer, H.: Dynamics of the genetic diversity of marine bacterial assemblages. Dissertation Universität Bremen, Bremen (2001), 154pp.
Back to Top